prot_Ecto-sp13_S_contig1786.5433.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1786.5433.1
Unique Nameprot_Ecto-sp13_S_contig1786.5433.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length155
Homology
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 1.310e-97
Identity = 151/154 (98.05%), Postives = 153/154 (99.35%), Query Frame = 0
Query:    1 MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEENAK 154
            MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMV+LAGVPAAVATSPSALTMPLDIVLGIAMPLHAH+GMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEE AK
Sbjct:    1 MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEEGAK 154          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.860e-34
Identity = 71/152 (46.71%), Postives = 95/152 (62.50%), Query Frame = 0
Query:    3 ASLQRSSALL----RPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKE 150
            +SL  S ALL    R     H R + +  PK  +     S++ AD G +GTK YH  N  +L   P A+  SPS LT PLD+ LG+A P+H H+G+NY+ISDYVP+++R  AR  +L A+ +  LGLLKLNL+G GLTET K+ WR  K +E
Sbjct:   16 SSLPSSGALLNRTSRTNAFLHGRCISTGQPKKVNVQ---SLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKKEE 164          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.090e-30
Identity = 59/116 (50.86%), Postives = 85/116 (73.28%), Query Frame = 0
Query:   35 GSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKE 150
            G  +VLNAD+ K  +K+ H  +  +LA VPAAV  SPSAL +P+D +L + +P+H+H+G+N V+SDYVPK+ +  AR  +L AS++  LGL+ LN+TGAG+TET+K+ WR P  KE
Sbjct:   37 GFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSKE 152          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.660e-29
Identity = 63/134 (47.01%), Postives = 92/134 (68.66%), Query Frame = 0
Query:   21 RRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEENAK 154
            R++H S     +  G+  V+NAD GKLGT ++H +N  +LA +P  +  +P+ +  P++++L +A PLHAHV MNYVISDYVP+ A+  AR AML  + +A+LGL+KL+LTG GL  T+ A W+  KP +E AK
Sbjct:   22 RQVHGS---RKARKGAVDVVNADVGKLGTSMFHYLNYGLLAALPVLL-VAPTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKLSLTGPGLVSTVGALWK--KPAKEEAK 149          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A6G0X8T0_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8T0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.000e-28
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 0
Query:   35 GSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEE 151
            G  +VLNAD+    TK  H  ++ +LA VP AV  SPSAL +P+D  L   +P+H H+G+N V+SDY+PK+ +G  R A+L  SV+  +GLL LN+TGAG+TE++KA W  P  K+E
Sbjct:   36 GVNAVLNADNSVYTTKAMHLTSLALLALVPTAVVLSPSALNVPVDYALAALIPIHGHIGLNGVLSDYLPKNVQGLGRVAVLGVSVVTFVGLLSLNITGAGITESVKAIWIEPPSKKE 152          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A225WU41_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WU41_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.990e-28
Identity = 63/155 (40.65%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    1 MSASLQRSSALL--RPVVTAHVRRLH-SSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWR-GPKPKEE 151
            M  S+ R+ ++L  RP    H R+   +   +     G A ++ AD+ KL  KL H  ++ ++  VP A   SPS L +P+D+ +G+ +P+HAH+GMN VISDYVPK+ R   R   L A+ L  LGLL++NL G G+TE +K  WR  P  K+E
Sbjct:    2 MHRSVMRTGSVLTKRPSGVRHFRQSRPTKYTENKEVTGLAGIVEADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRESPNKKQE 156          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.120e-27
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   40 LNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPK----SARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWR 144
            L AD+G + TKLYH +NM +L   P A    PS +T PLD+ LG+ MPLH H+GMNYVI+DYVPK    +ARG AR  ML  + +   GL  LNLTG G+T T+K  W+
Sbjct:   33 LAADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGLTHLNLTGKGITATIKGLWQ 141          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A0P1AEG3_PLAHL (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEG3_PLAHL)

HSP 1 Score: 109 bits (273), Expect = 1.270e-27
Identity = 65/158 (41.14%), Postives = 90/158 (56.96%), Query Frame = 0
Query:    1 MSASLQRSSALLRPVVTAHVRRLHSSVP----KTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWR-GPKPKEENA 153
            M  SL RS  +L    +  VR    S P    +     G A +L AD+  L  K  H  ++ ++A VP A   SPS L  P+D+ +G+ +P+HAH+GMN VISDYVP+S R  AR   L A+ L  +GLL++NL G G+TE +K  WR  P+ K+  A
Sbjct:    2 MHRSLMRSGTVLSKRPSLAVRHFRKSSPTKYTENKELTGMAGILEADNHALSVKAMHLTSLGLMAAVPVAFVLSPSPLAFPVDMAMGVMLPVHAHIGMNNVISDYVPQSMRTLARLGWLGATSLMFVGLLRVNLEGPGITEVVKTIWRESPEKKKVKA 159          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.440e-27
Identity = 54/114 (47.37%), Postives = 77/114 (67.54%), Query Frame = 0
Query:   38 SVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKEE 151
            +++ AD      KL+H  N+ ++   P A+   PS L+MP+D+ L I  PLHAH+GMN + +DYVP S  G AR A+LA SVL+T+GLLKL ++  G+T TLKA W+ PK +E+
Sbjct:   38 NLVGADQTLSQAKLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKLAVSEDGITGTLKAVWKEPKKEEK 151          
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Match: D0NIT5_PHYIT (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=11 Tax=Phytophthora TaxID=4783 RepID=D0NIT5_PHYIT)

HSP 1 Score: 109 bits (272), Expect = 2.000e-27
Identity = 63/152 (41.45%), Postives = 87/152 (57.24%), Query Frame = 0
Query:    1 MSASLQRSSALLR----PVVTAHVRRLHSSVP----KTSSAPGSASVLNADDGKLGTKLYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWR 144
            M  SL RS   +     P  ++ VR    S P    +     G A ++ AD+  L  KL H  ++ ++  VP A   SPS L +P+D+ LG+ +P+HAH+GMN VISDYVPK+ R  AR   L A+ L  LGLL++NL G G+TE +K  WR
Sbjct:    2 MHRSLMRSGTAMTKRTAPRPSSSVRHFRKSAPTKYTENKEVTGLAGIVEADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWR 153          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1786.5433.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI1.310e-9798.05Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA4.860e-3446.71Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W4GD77_9STRA3.090e-3050.86Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA1.660e-2947.01Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A6G0X8T0_9STRA2.000e-2848.72Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A225WU41_9STRA2.990e-2840.65Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S2WU59_9STRA1.120e-2752.29Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A0P1AEG3_PLAHL1.270e-2741.14Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA1.440e-2747.37Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
D0NIT5_PHYIT2.000e-2741.45Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05328CybScoord: 53..143
e-value: 1.2E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR13337:SF2SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIALcoord: 16..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 99..109
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..154
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..53
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 45..144
e-value: 6.9E-18
score: 66.5
IPR007992Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybSPANTHERPTHR13337SUCCINATE DEHYDROGENASEcoord: 16..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1786contigEcto-sp13_S_contig1786:10812..13709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1786.5433.1mRNA_Ecto-sp13_S_contig1786.5433.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1786 10812..14442 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1786.5433.1 ID=prot_Ecto-sp13_S_contig1786.5433.1|Name=mRNA_Ecto-sp13_S_contig1786.5433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTK
LYHAVNMVILAGVPAAVATSPSALTMPLDIVLGIAMPLHAHVGMNYVISD
YVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPKE
ENAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR007992CybS