prot_Ecto-sp13_S_contig17855.5430.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17855.5430.1
Unique Nameprot_Ecto-sp13_S_contig17855.5430.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A6H5KEK1_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.780e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII
Sbjct:  139 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 193          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A7S2UU23_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU23_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.060e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGS-MTMGKWVRKII 55
            DSP+IRAIGFLYLRYT PPK LW W+EP++DDEEE  PSP   S MTMG++V+KI+
Sbjct:   43 DSPYIRAIGFLYLRYTHPPKLLWDWIEPFLDDEEEITPSPDPSSKMTMGQYVQKIV 98          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A061RVA8_9CHLO (Pre-mRNA-splicing factor 38 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RVA8_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.190e-19
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRA+GFL LRY C PKE+W W+  Y+DD EEFKPSP   S+TMG ++R ++
Sbjct:   88 DSPYIRAVGFLLLRYICNPKEIWSWVSSYVDDPEEFKPSPYGASITMGAFLRDLL 142          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1V9Z9B0_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9B0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.130e-18
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMT-MGKWVRKII 55
            DSP+IR IGFLYLRY C P+ELW W EPY+DDEEEF  S  +  +T MG WVR ++
Sbjct:  129 DSPYIRCIGFLYLRYVCDPEELWSWYEPYLDDEEEFNASANDKILTTMGAWVRSLL 184          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8Q576_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q576_NELNU)

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-18
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG +VR ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYVKDEEEFSPGSNGRVTTMGAYVRDLL 144          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: UPI001CB94151 (pre-mRNA splicing factor SR-like 1 isoform X4 n=4 Tax=Asteraceae TaxID=4210 RepID=UPI001CB94151)

HSP 1 Score: 81.6 bits (200), Expect = 3.280e-18
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRA+GFLYLRY   PK LWGW EPY+ D+EEF P       TMG +VR ++
Sbjct:   88 DSPYIRAVGFLYLRYAADPKSLWGWFEPYIKDDEEFSPGSNGRMTTMGVYVRDLL 142          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8QCF3_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QCF3_NELNU)

HSP 1 Score: 82.4 bits (202), Expect = 3.340e-18
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG ++R ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYLKDEEEFSPGSNGRVTTMGVYIRDLL 144          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8QAW9_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QAW9_NELNU)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-18
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG ++R ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYLKDEEEFSPGSNGRVTTMGVYIRDLL 144          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A2P6UZR9_9CHLO (Pre-mRNA-splicing factor 38 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZR9_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.020e-18
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTE--GSMTMGKWVRKII 55
            DSP+IRA+GFLYLRY C P++LW W +PYM DEEEF+PSP+    ++TMG++ R I+
Sbjct:   89 DSPYIRAVGFLYLRYVCDPRKLWNWFKPYMRDEEEFEPSPSGLGTTVTMGEYARDIL 145          
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A061RJ78_9CHLO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJ78_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.140e-18
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 55
            DSP+IRA+GFL LRY C PKE+W W+  Y+DD EEFKPSP   S+TMG ++R ++
Sbjct:   88 DSPYIRAVGFLLLRYICNPKEIWSWVSSYVDDPEEFKPSPYGASITMGAFLRDLL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEK1_9PHAE1.780e-33100.00Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2UU23_9STRA1.060e-2169.64Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fib... [more]
A0A061RVA8_9CHLO4.190e-1960.00Pre-mRNA-splicing factor 38 n=1 Tax=Tetraselmis sp... [more]
A0A1V9Z9B0_9STRA2.130e-1862.50Pre-mRNA-splicing factor 38 n=1 Tax=Thraustotheca ... [more]
A0A1U8Q576_NELNU2.800e-1861.82Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
UPI001CB941513.280e-1858.18pre-mRNA splicing factor SR-like 1 isoform X4 n=4 ... [more]
A0A1U8QCF3_NELNU3.340e-1860.00Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
A0A1U8QAW9_NELNU3.560e-1860.00Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
A0A2P6UZR9_9CHLO4.020e-1859.65Pre-mRNA-splicing factor 38 n=1 Tax=Micractinium c... [more]
A0A061RJ78_9CHLO4.140e-1860.00Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tet... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 1..55
e-value: 1.7E-14
score: 54.0
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..55
NoneNo IPR availablePANTHERPTHR23142:SF2PRE-MRNA-SPLICING FACTOR 38Bcoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17855contigEcto-sp13_S_contig17855:11..757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17855.5430.1mRNA_Ecto-sp13_S_contig17855.5430.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17855 11..757 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17855.5430.1 ID=prot_Ecto-sp13_S_contig17855.5430.1|Name=mRNA_Ecto-sp13_S_contig17855.5430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKW
VRKIIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38