mRNA_Ecto-sp13_S_contig17824.5417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17824.5417.1
Unique NamemRNA_Ecto-sp13_S_contig17824.5417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.080e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
            RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY
Sbjct:  826 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 889          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE)

HSP 1 Score: 142 bits (359), Expect = 6.710e-38
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
            R+DQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDEN FDSDSLQLLCY
Sbjct:  835 REDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENKFDSDSLQLLCY 898          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A6M2EQP3_9ROSI (Piwi domain-containing protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2EQP3_9ROSI)

HSP 1 Score: 103 bits (256), Expect = 2.960e-26
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 FFASSRCRDDQ-DKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            FF +   R DQ DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRP  YHVL+DEN F SD LQ L    CY
Sbjct:   32 FFPADHSRRDQTDKSGNILPGTVVDTAICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSSDGLQTLTNNLCY 107          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A1J3GMK6_NOCCA (Protein argonaute 5 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GMK6_NOCCA)

HSP 1 Score: 102 bits (253), Expect = 4.100e-26
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            R+  DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVL DENAF +D+LQ+L    CY
Sbjct:   41 RETTDKSGNILPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENAFSADALQMLTNSLCY 108          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: UPI002023DB23 (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002023DB23)

HSP 1 Score: 101 bits (251), Expect = 1.520e-25
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            R   DKSGN+ PGTVV++ ICHP E+DFYL SH G+QGTSRPA YHVLWDEN F +D LQ L    CY
Sbjct:   20 RSTTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADQLQSLTNNLCY 87          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A022S1Y8_ERYGU (Piwi domain-containing protein (Fragment) n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022S1Y8_ERYGU)

HSP 1 Score: 101 bits (251), Expect = 1.780e-25
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 FFASSRCRDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            F A  + R   DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVL+DEN   +D+LQ+L    CY
Sbjct:   27 FPADHKSRSTTDKSGNILPGTVVDTKICHPNEFDFYLCSHAGIQGTSRPAHYHVLYDENRLSADALQILTNNLCY 101          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A7J7LVD7_9MAGN (Piwi domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LVD7_9MAGN)

HSP 1 Score: 102 bits (254), Expect = 2.870e-25
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            R   D+SGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVLWDEN F +D LQ L    CY
Sbjct:   97 RSSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFSADGLQSLTNNLCY 164          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A804MKR1_MAIZE (Piwi domain-containing protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A804MKR1_MAIZE)

HSP 1 Score: 99.8 bits (247), Expect = 3.150e-25
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
            RD  D+SGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRP  YHVL+DEN F +D LQ+L    CY
Sbjct:   40 RDVTDRSGNILPGTVVDTEICHPREFDFYLCSHAGIQGTSRPIHYHVLYDENRFSADGLQILTNNLCY 107          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A383VYD8_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VYD8_TETOB)

HSP 1 Score: 106 bits (265), Expect = 3.320e-25
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
            RD+QDKSGNV PGTVV++GICHP ++DF+L SH GLQGT++PA YHVL DENAF +D LQLL Y
Sbjct: 1152 RDNQDKSGNVLPGTVVDSGICHPSQFDFFLNSHAGLQGTNKPAHYHVLVDENAFSADGLQLLTY 1215          
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A4P9VYH5_9FUNG (Piwi domain-containing protein (Fragment) n=2 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VYH5_9FUNG)

HSP 1 Score: 102 bits (253), Expect = 3.480e-25
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCYQ 216
            ++D D+SGNV PGTVVETGI HP E+DFYL SH GLQGTS+P  YHVL+DEN F SD+LQ L Y+
Sbjct:  135 KEDADRSGNVLPGTVVETGITHPSEFDFYLASHPGLQGTSKPTHYHVLYDENRFTSDALQELTYR 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK3_ECTSI4.080e-39100.00Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A2S1PRW8_FUCSE6.710e-3896.88Putative argonaute n=1 Tax=Fucus serratus TaxID=87... [more]
A0A6M2EQP3_9ROSI2.960e-2664.47Piwi domain-containing protein n=1 Tax=Populus dav... [more]
A0A1J3GMK6_NOCCA4.100e-2667.65Protein argonaute 5 (Fragment) n=2 Tax=Noccaea cae... [more]
UPI002023DB231.520e-2566.18hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
A0A022S1Y8_ERYGU1.780e-2561.33Piwi domain-containing protein (Fragment) n=2 Tax=... [more]
A0A7J7LVD7_9MAGN2.870e-2566.18Piwi domain-containing protein n=1 Tax=Kingdonia u... [more]
A0A804MKR1_MAIZE3.150e-2564.71Piwi domain-containing protein n=3 Tax=Zea mays Ta... [more]
A0A383VYD8_TETOB3.320e-2571.88Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A4P9VYH5_9FUNG3.480e-2569.23Piwi domain-containing protein (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17824contigEcto-sp13_S_contig17824:2695..3559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score145.2
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D7FQK3
Model size219
KEGG koko:K11593
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.gene silencing by RNA
EggNOG OGsKOG1041@1,KOG1041@2759
Cds size219
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.7437117-CDS-Ecto-sp13_S_contig17824:2694..27411681462923.7437117-CDS-Ecto-sp13_S_contig17824:2694..2741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17824 2695..2741 -
1681462923.7576816-CDS-Ecto-sp13_S_contig17824:3387..35591681462923.7576816-CDS-Ecto-sp13_S_contig17824:3387..3559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17824 3388..3559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17824.5417.1prot_Ecto-sp13_S_contig17824.5417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17824 2695..3559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17824.5417.1

>prot_Ecto-sp13_S_contig17824.5417.1 ID=prot_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
FFASSRCRDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPA
KYHVLWDENAFDSDSLQLLCYQ*
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mRNA from alignment at Ecto-sp13_S_contig17824:2695..3559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17824.5417.1 ID=mRNA_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17824:2695..3559- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTGCTTCCTCTCGCTGCAGGGATGACCAGGACAAGTCCGGCAACGT CTTCCCCGGGACCGTGGTCGAGACTGGCATCTGTCACCCCATGGAGTGGG ACTTCTACCTCATGTCCCACGGAGGCCTGCAGGGGACCTCTCGCCCGGCC AAGTACCACGTGCTCTGGGACGGTGAGAAGAGCTGGCAGCGACGGGCCGG CCGCTCTTCGTGCATATTTCTATTGTGTGCAGGACCCCCCCCCCCCCCTC TCTGTCTAACTATTCATTTGAGCGTGCCCCCCGCTGTAGTTCGCCTTCTT GATATTTTGTTTGTTTTGCTGGTTCGTGACCGTGGGCATAGTCCAAAATT CTAGCGCAAGGTGTCGCAAAATATGTGGTGCTTGACCAACGCTGCTCCCG GCCGCCAGCGATCTTATGAATTGTTGGGGACGACGGCAGCACAGAACCGT CCGGCCAAAGGCTCGGATTTGGATAAATCCTTGGGGTTTGCCGTGTTGAT GTGTGGAGATCCATTATTGCCCTCACTGCTGTGCGGCAAAGCGTCAAATG AAATCATGTGCATGACGCTACTTCTTCTACCGAGGGCGACAGCTCGCGAA AGTTCGCCACCAACAAAACTGAGGGACAGCGCTTTCGCAGCAGCAACCGA TCCGGATGGAATGGCGTCAGAAACTCTGGAGTTGAAAGGATAATCACGGC GTAATAGCTGCCCTCTTGATGACAGCAGTATTTGATCGACCGCCCTCCAC TTACGTGTATCCTCCCCGCCCCGCCCCCCTTTCCTCTACCGTGTTTAACT TTTTTCTTCTTTTTGCAGAGAACGCGTTCGACTCGGACTCTCTCCAGCTG CTGTGCTACCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17824:2695..3559-

>mRNA_Ecto-sp13_S_contig17824.5417.1 ID=mRNA_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17824:2695..3559- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTGCTTCCTCTCGCTGCAGGGATGACCAGGACAAGTCCGGCAACGT
CTTCCCCGGGACCGTGGTCGAGACTGGCATCTGTCACCCCATGGAGTGGG
ACTTCTACCTCATGTCCCACGGAGGCCTGCAGGGGACCTCTCGCCCGGCC
AAGTACCACGTGCTCTGGGACGAGAACGCGTTCGACTCGGACTCTCTCCA
GCTGCTGTGCTACCAGTGA
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