mRNA_Ecto-sp13_S_contig17824.5417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI) HSP 1 Score: 146 bits (368), Expect = 4.080e-39 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY
Sbjct: 826 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 889
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE) HSP 1 Score: 142 bits (359), Expect = 6.710e-38 Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
R+DQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDEN FDSDSLQLLCY
Sbjct: 835 REDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENKFDSDSLQLLCY 898
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A6M2EQP3_9ROSI (Piwi domain-containing protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2EQP3_9ROSI) HSP 1 Score: 103 bits (256), Expect = 2.960e-26 Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 FFASSRCRDDQ-DKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
FF + R DQ DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRP YHVL+DEN F SD LQ L CY
Sbjct: 32 FFPADHSRRDQTDKSGNILPGTVVDTAICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSSDGLQTLTNNLCY 107
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A1J3GMK6_NOCCA (Protein argonaute 5 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GMK6_NOCCA) HSP 1 Score: 102 bits (253), Expect = 4.100e-26 Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
R+ DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVL DENAF +D+LQ+L CY
Sbjct: 41 RETTDKSGNILPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENAFSADALQMLTNSLCY 108
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: UPI002023DB23 (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002023DB23) HSP 1 Score: 101 bits (251), Expect = 1.520e-25 Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
R DKSGN+ PGTVV++ ICHP E+DFYL SH G+QGTSRPA YHVLWDEN F +D LQ L CY
Sbjct: 20 RSTTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADQLQSLTNNLCY 87
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A022S1Y8_ERYGU (Piwi domain-containing protein (Fragment) n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022S1Y8_ERYGU) HSP 1 Score: 101 bits (251), Expect = 1.780e-25 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 1 FFASSRCRDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
F A + R DKSGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVL+DEN +D+LQ+L CY
Sbjct: 27 FPADHKSRSTTDKSGNILPGTVVDTKICHPNEFDFYLCSHAGIQGTSRPAHYHVLYDENRLSADALQILTNNLCY 101
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A7J7LVD7_9MAGN (Piwi domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LVD7_9MAGN) HSP 1 Score: 102 bits (254), Expect = 2.870e-25 Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
R D+SGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRPA YHVLWDEN F +D LQ L CY
Sbjct: 97 RSSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFSADGLQSLTNNLCY 164
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A804MKR1_MAIZE (Piwi domain-containing protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A804MKR1_MAIZE) HSP 1 Score: 99.8 bits (247), Expect = 3.150e-25 Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLL----CY 213
RD D+SGN+ PGTVV+T ICHP E+DFYL SH G+QGTSRP YHVL+DEN F +D LQ+L CY
Sbjct: 40 RDVTDRSGNILPGTVVDTEICHPREFDFYLCSHAGIQGTSRPIHYHVLYDENRFSADGLQILTNNLCY 107
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A383VYD8_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VYD8_TETOB) HSP 1 Score: 106 bits (265), Expect = 3.320e-25 Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCY 213
RD+QDKSGNV PGTVV++GICHP ++DF+L SH GLQGT++PA YHVL DENAF +D LQLL Y
Sbjct: 1152 RDNQDKSGNVLPGTVVDSGICHPSQFDFFLNSHAGLQGTNKPAHYHVLVDENAFSADGLQLLTY 1215
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Match: A0A4P9VYH5_9FUNG (Piwi domain-containing protein (Fragment) n=2 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VYH5_9FUNG) HSP 1 Score: 102 bits (253), Expect = 3.480e-25 Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 22 RDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAKYHVLWDENAFDSDSLQLLCYQ 216
++D D+SGNV PGTVVETGI HP E+DFYL SH GLQGTS+P YHVL+DEN F SD+LQ L Y+
Sbjct: 135 KEDADRSGNVLPGTVVETGITHPSEFDFYLASHPGLQGTSKPTHYHVLYDENRFTSDALQELTYR 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17824.5417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17824.5417.1 >prot_Ecto-sp13_S_contig17824.5417.1 ID=prot_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp FFASSRCRDDQDKSGNVFPGTVVETGICHPMEWDFYLMSHGGLQGTSRPAback to top mRNA from alignment at Ecto-sp13_S_contig17824:2695..3559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17824.5417.1 ID=mRNA_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17824:2695..3559- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17824:2695..3559- >mRNA_Ecto-sp13_S_contig17824.5417.1 ID=mRNA_Ecto-sp13_S_contig17824.5417.1|Name=mRNA_Ecto-sp13_S_contig17824.5417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17824:2695..3559- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |