mRNA_Ecto-sp13_S_contig17821.5416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI) HSP 1 Score: 623 bits (1606), Expect = 1.170e-201 Identity = 330/355 (92.96%), Postives = 337/355 (94.93%), Query Frame = 1
Query: 1 QEGKNASAMIWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSASGSWTDGARVALGQGPRRPAMFVAWAAAADGKQVESSPPYQVMTGGQNYVVFWTLRPNLSSRLGNVRRSCPPADGVTAIAAESSPEAERAPASNEMVSEAAKHSVFSSAEKAMAETFTCGVAIGYEGGKAGSASAGGAGEEAAGAVVTAVTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSPSEAVRAVTVNRKESNMACGTSSGRVIEVSLDSGDTSVLVDGPAPGLPPINNAADGAATAAALNRAAAAVAASPKD 1065
QEGKNASAMIWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSASG+WTDGARVALGQGPRRPAMFV WAAAADGKQ +SSPPYQVMTGGQNYVVFWTLRP+LSSRLGNVRRSCPPADG TA AAESS EAERAPASNE VS A K SV SSAEKAM ETFTCGVAIG GGKAGS SAGGAGEEAAGAVVTAVTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSPSEAVRAVTVNRKESNMACGTSSGRVIEVSLDSGDTSVL+DGPAPG PP++N ADGA AAA+NRAAAAVAASPKD
Sbjct: 2010 QEGKNASAMIWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSASGTWTDGARVALGQGPRRPAMFVTWAAAADGKQEKSSPPYQVMTGGQNYVVFWTLRPSLSSRLGNVRRSCPPADGATATAAESSSEAERAPASNETVSGATKSSVISSAEKAMVETFTCGVAIGCGGGKAGSTSAGGAGEEAAGAVVTAVTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSPSEAVRAVTVNRKESNMACGTSSGRVIEVSLDSGDTSVLIDGPAPGPPPVDNTADGATAAAAMNRAAAAVAASPKD 2364
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: A0A6H5KFM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFM8_9PHAE) HSP 1 Score: 350 bits (899), Expect = 9.500e-117 Identity = 206/258 (79.84%), Postives = 216/258 (83.72%), Query Frame = 1
Query: 304 MTGGQNYVVFWTLRPNLSSRLGNVRRSCPPADGVTAIAAESSPEAERAPASNEMVSEAAKHSVFSSAEKAMAETFTCGVAIGYEGGKAGSASAGGAGEEAAGAVVTAVTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSP----SEAVRAVTVNRKESNMACGTSSGRVIEVSLDSGDTSVLVDGPAPGLPPINNAADGAATAAALNRAAAAVAASPKD 1065
MTGGQNYVVFWTLRPNLSSRLGNVRRSCPPAD +A AAESS EAERAPASNEMVSEA K S FSSAEKAMAETFTCGVAIG GGKAGSASAGGAGEEAAGAVVTAVTGTASGAIAVW+N ECVKMVLGVHGA+AVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQ A+R + R +A I VSLDSGDT+VLVDGPAPGLPP++NAAD A AAALN +AAVAASPKD
Sbjct: 1 MTGGQNYVVFWTLRPNLSSRLGNVRRSCPPADSASATAAESSSEAERAPASNEMVSEATKPSAFSSAEKAMAETFTCGVAIGCGGGKAGSASAGGAGEEAAGAVVTAVTGTASGAIAVWKNLECVKMVLGVHGATAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQVHFSYYVLEFAMRGLGELRMRGCVAVWLYFD--IVVSLDSGDTAVLVDGPAPGLPPVDNAADAADAAAALNHTSAAVAASPKD 256
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: A0A7S3UW80_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW80_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 8.030e-12 Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 622 AVTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSPSEAVR-AVTVNRKESNMACGTSSGRVIEVSLDSGDTSVLVDG 963
AVTGTASGA+ VWE + V G H A AV CL+ GGFVSGG DG V W ++ + R E +PS+ V AV ++ +++ +A GT+ + E+S+DSG L +G
Sbjct: 352 AVTGTASGALYVWEGNRVARAVEGAH-ARAVTCLNFADGGGFVSGGRDGRVVWWSPEVEQLAAFDLARLEDAPSDPVPVAVDIDAEQAKVAVGTAGAELYELSVDSGAGCRLGEG 465
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: A0A7S2V7Z0_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Z0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 8.270e-11 Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 625 VTGTASGAIAVWENFECVKMVLGVHGASAVLCLSPTYSGGFVSGGADGNVCVWDNQLNVKGSIITIRQEGSPSEAVR-AVTVNRKESNMACGTSSGRVIEVSLDSGDTSVLVDG 963
VTGT+SG + VWE +C V G V C S T GG ++GG DG + +WDN+L+ + E +P V +V +N S + C T + + E+S+DSG LV G
Sbjct: 95 VTGTSSGDLYVWEGHQCASKVAAHSGP--VSCASSTSRGGLITGGKDGKIILWDNELSQLEQFELSKLEPAPLRPVPVSVAMNSHMSKIVCATLAAEIYEISVDSGSACCLVQG 206
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: A0A7S4T2T9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T2T9_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 9.020e-8 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 28 IWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSASGSWTDGARVALGQGPRRPAMFVAWAAAADGKQVESSPPYQVMTGGQNYVVFWT 339
IWD TG + +LP ++ ++FSPD + +GAD DNS+C+W S SG W D + +G F + A + P + V +GG++++ FWT
Sbjct: 363 IWDAQTGAQIILLPEFHRKGIKCVAFSPDAKKVVSVGADSDNSICIWKSHSGEWHDATMHSNTKGGAYQVFFAQFTA------FDHCPNFLV-SGGKDHINFWT 459
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Match: A0A7S4WDF6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WDF6_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.020e-7 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 28 IWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSASGSWTDGARVALGQGPRRPAMFVAWAAAADGKQVESSPPYQVMTGGQNYVVFWT 339
IWD TG + +LP ++ ++FSPD + +GAD DNS+C+W S SG W D + +G F + A + P + V +GG++++ FWT
Sbjct: 476 IWDAQTGAQIILLPEFHRKGIKCVAFSPDAKKVVSVGADSDNSICIWKSHSGEWHDATMHSNTKGGAYQVFFAQFTA------FDHCPNFLV-SGGKDHINFWT 572 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17821.5416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17821.5416.1 >prot_Ecto-sp13_S_contig17821.5416.1 ID=prot_Ecto-sp13_S_contig17821.5416.1|Name=mRNA_Ecto-sp13_S_contig17821.5416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp MIWDPATGHRTCVLPASLFGAVRRLSFSPDGSMLCGIGADRDNSLCVWSSback to top mRNA from alignment at Ecto-sp13_S_contig17821:165..3206- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17821.5416.1 ID=mRNA_Ecto-sp13_S_contig17821.5416.1|Name=mRNA_Ecto-sp13_S_contig17821.5416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17821:165..3206- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17821:165..3206- >mRNA_Ecto-sp13_S_contig17821.5416.1 ID=mRNA_Ecto-sp13_S_contig17821.5416.1|Name=mRNA_Ecto-sp13_S_contig17821.5416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17821:165..3206- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |