mRNA_Ecto-sp13_S_contig17786.5393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17786.5393.1
Unique NamemRNA_Ecto-sp13_S_contig17786.5393.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: D8LL87_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL87_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.010e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 1
Query:    4 LSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            + +THPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA
Sbjct:  203 IRKTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 266          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A6H5KRY9_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.480e-29
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    4 LSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            + + HP YRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA
Sbjct:  251 IRKNHPKYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 314          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A835Z5H8_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.180e-15
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            R+ + HP Y IAILYV+AS E V  RARRR EETGR VPEAEI DSL R P+ V  L  RADFVA
Sbjct:  223 RIREFHPHYSIAILYVYASRETVFSRARRRGEETGRHVPEAEILDSLERAPKAVRRLRDRADFVA 287          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A7R9UHT2_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UHT2_DIALT)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-14
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            ++ + HP Y+IAILYV A EEQ+  R R+RAE TGR VPEAEI+DSL RVPR+VA L P A F+A
Sbjct:  271 QVRRDHPDYQIAILYVTADEEQIAARVRKRAELTGRHVPEAEIRDSLQRVPRSVAALAPCAHFLA 335          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A8J6C1B1_DIALT (Zeta_toxin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C1B1_DIALT)

HSP 1 Score: 75.5 bits (184), Expect = 1.640e-14
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            R+   HP Y+IAI+YV A E  +  R  RRA ETGR+VPE EI DSL RVPR++A L P+ADFVA
Sbjct:  226 RIRARHPDYQIAIVYVSADETTIRRRVARRAAETGRLVPETEIADSLLRVPRSIAQLAPQADFVA 290          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A7S3AF24_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AF24_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 1.680e-14
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            L Q HP YRIAI++V ASE+++LER RRRAE TGR VPEAE+ DS+ RVP +VA+L   A F+A
Sbjct:  233 LKQRHPAYRIAIIHVVASEDEILERVRRRAEVTGRHVPEAEVIDSITRVPASVALLAQEAAFLA 296          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: R1DIP1_EMIHU (Zeta_toxin domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DIP1_EMIHU)

HSP 1 Score: 71.2 bits (173), Expect = 5.300e-13
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            RL + HP Y IAI++V A+ + VLER +RRA  TGR VPEAEI DSL RVP  V +L PR DF+A
Sbjct:  210 RLRREHPDYSIAIVHVVATRQAVLERVKRRAAVTGRHVPEAEIDDSLVRVPPAVRLLAPRVDFLA 274          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A7S0G7Z0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7Z0_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.800e-10
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   25 YRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            YRIAILYVHA+ E V+ER R RAE+TGR V E ++ DSL RVP  V  L   ADFVA
Sbjct:  258 YRIAILYVHATREVVMERVRMRAEKTGRYVREQDVNDSLKRVPLAVYELASEADFVA 314          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: A0A7S0QBV8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBV8_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 8.570e-10
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            +L   +P Y+IA++ V AS++ + ER +RRA+ETGR VP AE+ DS+ RVP+TVA L    +F+A
Sbjct:  256 QLRNKYPEYQIAVINVTASKDVIFERVKRRADETGRDVPTAEVLDSIERVPKTVAQLAGSLEFLA 320          
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Match: R1DEY9_EMIHU (Zeta_toxin domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY9_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 1.740e-9
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   16 HPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRVPRTVAMLMPRADFVA 195
            HP YR+AIL+V ASEEQ+       A ETGR V EAE++DSL RVPR+   L+P  DF A
Sbjct:  178 HPAYRLAILHVTASEEQIF------ARETGRYVGEAEVRDSLERVPRSTRALVPLVDFSA 231          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17786.5393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LL87_ECTSI1.010e-2995.31Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KRY9_9PHAE6.480e-2992.19Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A835Z5H8_9STRA3.180e-1566.15Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7R9UHT2_DIALT1.340e-1463.08Hypothetical protein (Fragment) n=2 Tax=Diacronema... [more]
A0A8J6C1B1_DIALT1.640e-1460.00Zeta_toxin domain-containing protein n=1 Tax=Diacr... [more]
A0A7S3AF24_9EUKA1.680e-1462.50Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R1DIP1_EMIHU5.300e-1360.00Zeta_toxin domain-containing protein n=2 Tax=Emili... [more]
A0A7S0G7Z0_9RHOD1.800e-1063.16Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0QBV8_9EUKA8.570e-1049.23Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
R1DEY9_EMIHU1.740e-956.67Zeta_toxin domain-containing protein n=1 Tax=Emili... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17786contigEcto-sp13_S_contig17786:3266..3460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.6
Seed ortholog evalue3.9e-11
Seed eggNOG ortholog2903.EOD08524
Model size195
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Zeta toxin
EggNOG OGs2BIBQ@1,2S1DY@2759
Cds size195
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.8140972-CDS-Ecto-sp13_S_contig17786:3265..34601681462921.8140972-CDS-Ecto-sp13_S_contig17786:3265..3460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17786 3266..3460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17786.5393.1prot_Ecto-sp13_S_contig17786.5393.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17786 3266..3460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17786.5393.1

>prot_Ecto-sp13_S_contig17786.5393.1 ID=prot_Ecto-sp13_S_contig17786.5393.1|Name=mRNA_Ecto-sp13_S_contig17786.5393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
RLSQTHPTYRIAILYVHASEEQVLERARRRAEETGRVVPEAEIKDSLYRV
PRTVAMLMPRADFVA
back to top

mRNA from alignment at Ecto-sp13_S_contig17786:3266..3460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17786.5393.1 ID=mRNA_Ecto-sp13_S_contig17786.5393.1|Name=mRNA_Ecto-sp13_S_contig17786.5393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17786:3266..3460- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTTTCCCAGACCCATCCCACATACCGCATCGCGATCTTGTACGTGCA CGCGAGCGAGGAGCAGGTGCTGGAGAGGGCTAGGAGACGAGCAGAGGAGA CGGGCAGGGTGGTGCCGGAGGCGGAGATCAAGGACTCGCTCTACCGCGTG CCCCGGACCGTGGCGATGCTCATGCCCAGGGCGGATTTCGTGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17786:3266..3460-

>mRNA_Ecto-sp13_S_contig17786.5393.1 ID=mRNA_Ecto-sp13_S_contig17786.5393.1|Name=mRNA_Ecto-sp13_S_contig17786.5393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17786:3266..3460- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCTTTCCCAGACCCATCCCACATACCGCATCGCGATCTTGTACGTGCA
CGCGAGCGAGGAGCAGGTGCTGGAGAGGGCTAGGAGACGAGCAGAGGAGA
CGGGCAGGGTGGTGCCGGAGGCGGAGATCAAGGACTCGCTCTACCGCGTG
CCCCGGACCGTGGCGATGCTCATGCCCAGGGCGGATTTCGTGGCG
back to top