mRNA_Ecto-sp13_S_contig17719.5364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: D8LLZ2_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ2_ECTSI) HSP 1 Score: 100 bits (250), Expect = 7.330e-23 Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 2
Query: 101 CLF---DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGETSVSRR 277
CLF +GNLVFGNAQLFASSVLPRYFKH NFSSFQRQL YFSWRKVVSKGG G+TS S +
Sbjct: 6 CLFFSSSEGNLVFGNAQLFASSVLPRYFKHGNFSSFQRQLNYFSWRKVVSKGGGGKTSSSEK 67
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A1V9Z6E6_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6E6_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 7.650e-9 Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 35 MKANTAAAPFLSTLLEMINR---GHCLFDDG-NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSK 244
M + APF+ TLLEM+ G C DG + + +FA +VLP++F+H FSSFQRQL YF +RK +
Sbjct: 1 MSRRKSIAPFIQTLLEMLQSNSPGLCWSTDGRSFDIIDTNVFAKAVLPQFFRHSKFSSFQRQLNYFGFRKQARR 74
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: T0RDE2_SAPDV (HSF_DOMAIN domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RDE2_SAPDV) HSP 1 Score: 57.8 bits (138), Expect = 3.990e-8 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query: 35 MKANTAAAPFLSTLLEMI-NRGHCLF--DDG-NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRK 232
M APF+ TL+EM+ + CL +DG + + +F++SVLPR+F+H F+SFQRQL YFS+RK
Sbjct: 1 MTPRPTLAPFIQTLIEMLQSHAPCLHWNEDGKSFDILDIDVFSTSVLPRFFRHSKFTSFQRQLNYFSFRK 70
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A8J2SSC3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSC3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.220e-7 Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 2
Query: 38 KANTAAAPFLSTLLEMINRGHCLF----DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKG 247
K T+ A FL L E++ R DG + G+ + VL RYF+H NFSSFQRQL YF + KV KG
Sbjct: 6 KRKTSPASFLLKLREVLAREDPAVISWDGDGKITIGDPKRLGDEVLTRYFRHGNFSSFQRQLNYFGYYKVQGKG 79
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A1V9Z8H0_9STRA (HSF-type DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8H0_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 2.530e-7 Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 2
Query: 56 APFLSTLLEMINRG----HCLFDDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGETSVSRRCHA 286
APF+ TL+EM+ G H D + + ++FA VLP +F+H F+SFQRQL YFS+RK + +++V HA
Sbjct: 10 APFIHTLVEMLRSGPTCLHWGADGRSFDILDIKVFAKVVLPTFFRHSKFTSFQRQLNYFSFRKQSRR----QSAVCTYAHA 86
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A7S3ZXR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXR4_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.770e-7 Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 2
Query: 38 KANTAAAPFLSTLLEMINRGHCLF----DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKG 247
K T+ A FL L E++ R DG + G+ + VL RYF+H NFSSFQRQL YF + KV KG
Sbjct: 6 KRKTSPASFLLKLREVLAREDPAVISWDGDGKITIGDPKRLGDEVLTRYFRHGNFSSFQRQLNYFGYYKVQGKG 79
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A485K7X6_9STRA (Aste57867_2585 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7X6_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.420e-7 Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 2
Query: 20 RTKENMKANTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGE 259
R +++ +TA PFL++L E++ + G C DG FG + ++ VLP YF+H F+SFQRQL YF +RK+ +G E E
Sbjct: 8 RKVPSIELSTATPPFLASLYEILTKEDPAVIGWC---DGGKAFGVYDFEVMEHHVLPTYFRHSKFASFQRQLNYFGFRKL-QRGRESE 91
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: W4G4K0_9STRA (HSF_DOMAIN domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4K0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.440e-7 Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2
Query: 44 NTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKV 235
++AA PFL++L EM+++ G C DG FG N +LP YF+H F+SFQRQL YF +RKV
Sbjct: 17 SSAAPPFLASLYEMLSKEDPRVIGWC---DGGKAFGVHNFDAMEKHMLPTYFRHSKFASFQRQLNYFGFRKV 85
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A6G0XRB4_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRB4_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 5.590e-7 Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 2
Query: 20 RTKENMKANTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGE 259
R K + + A PFL+ L +++N+ G C DDG FG N Q+ + +LP Y++ F+SFQRQL YF +RK+++ E
Sbjct: 8 RKKSTPELSIATPPFLAALYDILNQEDPSVIGWC--DDGR-AFGVYNIQVLETRILPAYYRLSKFASFQRQLNYFGFRKIITSRSSSE 92
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: B5Y5T6_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5T6_PHATC) HSP 1 Score: 55.5 bits (132), Expect = 6.480e-7 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 2
Query: 119 NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKV 235
N V N + FASSVLPRYFKH NFSSF RQL ++ +RK+
Sbjct: 113 NFVVKNTEKFASSVLPRYFKHSNFSSFARQLNFYGFRKL 151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17719.5364.1 >prot_Ecto-sp13_S_contig17719.5364.1 ID=prot_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp SEAIRRPDKREYEGEHRSRSVSLHLAGDDQPGTLSVRRRKSSVWKRSALRback to top mRNA from alignment at Ecto-sp13_S_contig17719:1790..2875+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17719.5364.1 ID=mRNA_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17719:1790..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17719:1790..2875+ >mRNA_Ecto-sp13_S_contig17719.5364.1 ID=mRNA_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17719:1790..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |