mRNA_Ecto-sp13_S_contig17719.5364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17719.5364.1
Unique NamemRNA_Ecto-sp13_S_contig17719.5364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: D8LLZ2_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.330e-23
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 2
Query:  101 CLF---DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGETSVSRR 277
            CLF    +GNLVFGNAQLFASSVLPRYFKH NFSSFQRQL YFSWRKVVSKGG G+TS S +
Sbjct:    6 CLFFSSSEGNLVFGNAQLFASSVLPRYFKHGNFSSFQRQLNYFSWRKVVSKGGGGKTSSSEK 67          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A1V9Z6E6_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6E6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.650e-9
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 2
Query:   35 MKANTAAAPFLSTLLEMINR---GHCLFDDG-NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSK 244
            M    + APF+ TLLEM+     G C   DG +    +  +FA +VLP++F+H  FSSFQRQL YF +RK   +
Sbjct:    1 MSRRKSIAPFIQTLLEMLQSNSPGLCWSTDGRSFDIIDTNVFAKAVLPQFFRHSKFSSFQRQLNYFGFRKQARR 74          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: T0RDE2_SAPDV (HSF_DOMAIN domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RDE2_SAPDV)

HSP 1 Score: 57.8 bits (138), Expect = 3.990e-8
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   35 MKANTAAAPFLSTLLEMI-NRGHCLF--DDG-NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRK 232
            M      APF+ TL+EM+ +   CL   +DG +    +  +F++SVLPR+F+H  F+SFQRQL YFS+RK
Sbjct:    1 MTPRPTLAPFIQTLIEMLQSHAPCLHWNEDGKSFDILDIDVFSTSVLPRFFRHSKFTSFQRQLNYFSFRK 70          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A8J2SSC3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSC3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.220e-7
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 2
Query:   38 KANTAAAPFLSTLLEMINRGHCLF----DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKG 247
            K  T+ A FL  L E++ R          DG +  G+ +     VL RYF+H NFSSFQRQL YF + KV  KG
Sbjct:    6 KRKTSPASFLLKLREVLAREDPAVISWDGDGKITIGDPKRLGDEVLTRYFRHGNFSSFQRQLNYFGYYKVQGKG 79          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A1V9Z8H0_9STRA (HSF-type DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8H0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-7
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 2
Query:   56 APFLSTLLEMINRG----HCLFDDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGETSVSRRCHA 286
            APF+ TL+EM+  G    H   D  +    + ++FA  VLP +F+H  F+SFQRQL YFS+RK   +    +++V    HA
Sbjct:   10 APFIHTLVEMLRSGPTCLHWGADGRSFDILDIKVFAKVVLPTFFRHSKFTSFQRQLNYFSFRKQSRR----QSAVCTYAHA 86          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A7S3ZXR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXR4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.770e-7
Identity = 32/74 (43.24%), Postives = 40/74 (54.05%), Query Frame = 2
Query:   38 KANTAAAPFLSTLLEMINRGHCLF----DDGNLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKG 247
            K  T+ A FL  L E++ R          DG +  G+ +     VL RYF+H NFSSFQRQL YF + KV  KG
Sbjct:    6 KRKTSPASFLLKLREVLAREDPAVISWDGDGKITIGDPKRLGDEVLTRYFRHGNFSSFQRQLNYFGYYKVQGKG 79          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A485K7X6_9STRA (Aste57867_2585 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7X6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.420e-7
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 2
Query:   20 RTKENMKANTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGE 259
            R   +++ +TA  PFL++L E++ +      G C   DG   FG  + ++    VLP YF+H  F+SFQRQL YF +RK+  +G E E
Sbjct:    8 RKVPSIELSTATPPFLASLYEILTKEDPAVIGWC---DGGKAFGVYDFEVMEHHVLPTYFRHSKFASFQRQLNYFGFRKL-QRGRESE 91          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: W4G4K0_9STRA (HSF_DOMAIN domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4K0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-7
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 2
Query:   44 NTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKV 235
            ++AA PFL++L EM+++      G C   DG   FG  N       +LP YF+H  F+SFQRQL YF +RKV
Sbjct:   17 SSAAPPFLASLYEMLSKEDPRVIGWC---DGGKAFGVHNFDAMEKHMLPTYFRHSKFASFQRQLNYFGFRKV 85          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: A0A6G0XRB4_9STRA (HSF_DOMAIN domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRB4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.590e-7
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   20 RTKENMKANTAAAPFLSTLLEMINR------GHCLFDDGNLVFG--NAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKVVSKGGEGE 259
            R K   + + A  PFL+ L +++N+      G C  DDG   FG  N Q+  + +LP Y++   F+SFQRQL YF +RK+++     E
Sbjct:    8 RKKSTPELSIATPPFLAALYDILNQEDPSVIGWC--DDGR-AFGVYNIQVLETRILPAYYRLSKFASFQRQLNYFGFRKIITSRSSSE 92          
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Match: B5Y5T6_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5T6_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 6.480e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 2
Query:  119 NLVFGNAQLFASSVLPRYFKHCNFSSFQRQLYYFSWRKV 235
            N V  N + FASSVLPRYFKH NFSSF RQL ++ +RK+
Sbjct:  113 NFVVKNTEKFASSVLPRYFKHSNFSSFARQLNFYGFRKL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17719.5364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLZ2_ECTSI7.330e-2380.65Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
A0A1V9Z6E6_9STRA7.650e-943.24HSF_DOMAIN domain-containing protein n=1 Tax=Thrau... [more]
T0RDE2_SAPDV3.990e-845.71HSF_DOMAIN domain-containing protein n=2 Tax=Sapro... [more]
A0A8J2SSC3_9STRA2.220e-743.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9Z8H0_9STRA2.530e-739.51HSF-type DNA-binding protein n=1 Tax=Achlya hypogy... [more]
A0A7S3ZXR4_9STRA2.770e-743.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485K7X6_9STRA3.420e-738.64Aste57867_2585 protein n=1 Tax=Aphanomyces stellat... [more]
W4G4K0_9STRA3.440e-744.44HSF_DOMAIN domain-containing protein n=8 Tax=Aphan... [more]
A0A6G0XRB4_9STRA5.590e-736.36HSF_DOMAIN domain-containing protein n=1 Tax=Aphan... [more]
B5Y5T6_PHATC6.480e-764.10Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17719contigEcto-sp13_S_contig17719:1790..2875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size289
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.499293-CDS-Ecto-sp13_S_contig17719:1789..19051681462919.499293-CDS-Ecto-sp13_S_contig17719:1789..1905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17719 1790..1905 +
1681462919.5139978-CDS-Ecto-sp13_S_contig17719:2703..28751681462919.5139978-CDS-Ecto-sp13_S_contig17719:2703..2875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17719 2704..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17719.5364.1prot_Ecto-sp13_S_contig17719.5364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17719 1790..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17719.5364.1

>prot_Ecto-sp13_S_contig17719.5364.1 ID=prot_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
SEAIRRPDKREYEGEHRSRSVSLHLAGDDQPGTLSVRRRKSSVWKRSALR
FERPAAILQALQLLLFPEAALLLLLEEGRQQGGGGGNLGKSSMPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig17719:1790..2875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17719.5364.1 ID=mRNA_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17719:1790..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAGGCTATACGGAGGCCGGACAAAAGAGAATATGAAGGCGAACACCG CAGCCGCTCCGTTTCTCTCCACCTTGCTGGAGATGATCAACCGGGGACAT TGTCTGTTCGACGACGGTAGGTAGCGACATTGATGAGACGGACGCGGGCG GACTAACAGATTTGGCGCTTAGGCTACAATGTGACAATGTAGACCCGGTA CCCGTATTGTTTGTGTCTCTGAACCCACCTTTCTTGGTCGCACGACCACA GATGAAGGGCCTGCGTCCTCCCCATGACGGCTCTGTGTGATGGCGAATGT TGTTCATGTTGAATGCAGGGTGCGTACTGCACGGTTCTTTCTTTCTATGC GACTGCTGTTGTGGTTCCTGAATGTTGTTCAGCCAACCGTGTTTGTGTAA GGATAACGCCCCCAACGCAAGGAAGGGACGCACGCGCACGCACAGACAAA CGCACGCCCCCAACGCATAGTGACGAGGCTGGCCGTGTGTATTCTATTAG CTTCGTACAATATATATGTAGTGTGGCCGTGTTAAGCGAATAGCTGTATC CTATTCTGTGGTCTACCTATGCTAAACAAGGAATTTGAAAAGTCGGGAGA AGACCGGAATTACCCCGCGCTCTCTGTTTGCGCGTGTTCTTCCCCCGTGG CCGGCAAGATTGTTTGGGACCTGGGCTTGACGCCGTGACATTAGTGGCGG GTCCAATGCTTCTCTCTCGGCTAAATGCAACTACCACACCGTATGTTACT GCGCACCTGCGATCTGCATTGTATCATGGTGACGACGGTGGTGGCAAAGA GCACGCTATTTTTTCGCAAAGTGGGTCCGCTGCTTCTTCTGTCAAGTCAT TCCTCCGTTGTAAAGGTGTCCATCCGATGCTGCTGCACTGCTGCCTCTCT TTCTTCCTCTTAAGGAAATCTAGTGTTTGGAAACGCTCAGCTCTTCGCTT CGAGCGTCCTGCCGCGATACTTCAAGCACTGCAACTTCTCCTCTTTCCAG AGGCAGCTCTACTACTTCTCTTGGAGGAAGGTCGTCAGCAAGGGGGGGGA GGGGGAAACCTCGGTAAGTCGTCGATGCCACGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17719:1790..2875+

>mRNA_Ecto-sp13_S_contig17719.5364.1 ID=mRNA_Ecto-sp13_S_contig17719.5364.1|Name=mRNA_Ecto-sp13_S_contig17719.5364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17719:1790..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAGGCTATACGGAGGCCGGACAAAAGAGAATATGAAGGCGAACACCG
CAGCCGCTCCGTTTCTCTCCACCTTGCTGGAGATGATCAACCGGGGACAT
TGTCTGTTCGACGACGGAAATCTAGTGTTTGGAAACGCTCAGCTCTTCGC
TTCGAGCGTCCTGCCGCGATACTTCAAGCACTGCAACTTCTCCTCTTTCC
AGAGGCAGCTCTACTACTTCTCTTGGAGGAAGGTCGTCAGCAAGGGGGGG
GAGGGGGAAACCTCGGTAAGTCGTCGATGCCACGCTAG
back to top