mRNA_Ecto-sp13_S_contig17711.5360.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17711.5360.1
Unique NamemRNA_Ecto-sp13_S_contig17711.5360.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: D7G070_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G070_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.040e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAKLKD 192
            GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAKLKD
Sbjct:  143 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAKLKD 206          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A835Z0J8_9STRA (Monothiol glutaredoxin-5, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.470e-28
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAKL 186
            GV FSS+N+LDYP +REG+K FS+WPTIPQ+Y+ GEFVGGCDI+TQ+H+SG+LETMLKEA L
Sbjct:  122 GVDFSSINILDYPAIREGVKKFSDWPTIPQVYLNGEFVGGCDIMTQMHKSGELETMLKEAGL 183          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A7S2HJB1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HJB1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.750e-26
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAK 183
            GV FSSVNVLDYP +REG+K FSEWPTIPQLY+ GEF+GGCDI+T +H+SG+L+ +L+E K
Sbjct:   92 GVDFSSVNVLDYPQIREGVKKFSEWPTIPQLYIDGEFIGGCDIVTSMHESGELKEILEEKK 152          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A354UZP6_9PROT (Glutaredoxin n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A354UZP6_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 9.290e-26
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKE 177
            GV F S NVL+ P LREGIK+FS+WPT+PQLYVKGEFVGGCDI+T++ QSG+LETM+KE
Sbjct:   45 GVPFQSANVLEDPELREGIKSFSQWPTVPQLYVKGEFVGGCDIVTEMFQSGELETMMKE 103          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A7R9UER6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UER6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.820e-25
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEA 180
            GV F+SVNVLDYP LRE IK +S WPTIPQLYV GEF+GGCDI+TQ+HQSG+LE + KEA
Sbjct:  126 GVDFASVNVLDYPLLRECIKEYSSWPTIPQLYVNGEFIGGCDIVTQMHQSGELEELFKEA 185          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A7R9ZLC7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLC7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.860e-25
Identity = 41/59 (69.49%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKE 177
            GV FSSVNVLDYP +REG+K +SEWPTIPQLYV GEF+GGCDI+TQ+H++G+L+ + +E
Sbjct:   94 GVDFSSVNVLDYPQIREGVKKYSEWPTIPQLYVNGEFIGGCDIITQMHENGELKEVFEE 152          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A7S1Z0Q3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z0Q3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.410e-25
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKEAK 183
            G+ FSSVNVLDYP +REG+K FSEWPTIPQLY+ GEF+GGCDI+T +H+SG+L  +L E K
Sbjct:  127 GIDFSSVNVLDYPQIREGVKKFSEWPTIPQLYINGEFIGGCDIVTSMHESGELAEILGEEK 187          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A6G0XHZ8_9STRA (Glutaredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.490e-25
Identity = 41/59 (69.49%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKE 177
            GVSF SVNVLD+P +REG+K FS+WPTIPQL+VKGEF+GGCDI+T +H+SG+LE + K+
Sbjct:   87 GVSFDSVNVLDHPEIREGVKEFSQWPTIPQLFVKGEFIGGCDIVTDMHKSGELEDLFKQ 145          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: A0A067BUX8_SAPPC (Glutaredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BUX8_SAPPC)

HSP 1 Score: 98.6 bits (244), Expect = 7.580e-25
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLK 174
            GVSF SVNVLD+P +REG+K FS+WPTIPQL+V GEFVGGCDI+T +H+SG+LE +LK
Sbjct:   87 GVSFDSVNVLDHPEIREGVKEFSQWPTIPQLFVNGEFVGGCDIITDMHKSGELEDLLK 144          
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Match: K5ZL91_9PROT (Glutaredoxin n=1 Tax=Acidocella sp. MX-AZ02 TaxID=1214225 RepID=K5ZL91_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 7.820e-25
Identity = 42/59 (71.19%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQSGDLETMLKE 177
            GV+FSSVNVL+ P +R+GIK FS WPTIPQLYVKGEF+GGCDI+T+++QSG+L+T+L E
Sbjct:   45 GVAFSSVNVLEDPEIRDGIKQFSNWPTIPQLYVKGEFIGGCDIVTEMYQSGELQTLLTE 103          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17711.5360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G070_ECTSI3.040e-38100.00Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z0J8_9STRA2.470e-2874.19Monothiol glutaredoxin-5, mitochondrial n=1 Tax=Tr... [more]
A0A7S2HJB1_9STRA3.750e-2670.49Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A354UZP6_9PROT9.290e-2674.58Glutaredoxin n=2 Tax=Acetobacteraceae TaxID=433 Re... [more]
A0A7R9UER6_9STRA3.820e-2575.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9ZLC7_9STRA3.860e-2569.49Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1Z0Q3_9STRA5.410e-2568.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6G0XHZ8_9STRA5.490e-2569.49Glutaredoxin domain-containing protein n=1 Tax=Aph... [more]
A0A067BUX8_SAPPC7.580e-2572.41Glutaredoxin domain-containing protein n=2 Tax=Sap... [more]
K5ZL91_9PROT7.820e-2571.19Glutaredoxin n=1 Tax=Acidocella sp. MX-AZ02 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17711contigEcto-sp13_S_contig17711:1376..1976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score99.0
Seed ortholog evalue8.7e-19
Seed eggNOG ortholog2850.Phatr37615
Model size195
KEGG koko:K07390
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glutaredoxin
EggNOG OGs2XCPR@2836,COG0278@1,KOG0911@2759
Cds size195
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.3283074-CDS-Ecto-sp13_S_contig17711:1375..14431681462919.3283074-CDS-Ecto-sp13_S_contig17711:1375..1443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17711 1376..1443 +
1681462919.3432963-CDS-Ecto-sp13_S_contig17711:1849..19761681462919.3432963-CDS-Ecto-sp13_S_contig17711:1849..1976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17711 1850..1976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17711.5360.1prot_Ecto-sp13_S_contig17711.5360.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17711 1376..1976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17711.5360.1

>prot_Ecto-sp13_S_contig17711.5360.1 ID=prot_Ecto-sp13_S_contig17711.5360.1|Name=mRNA_Ecto-sp13_S_contig17711.5360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
GVSFSSVNVLDYPPLREGIKTFSEWPTIPQLYVKGEFVGGCDILTQLHQS
GDLETMLKEAKLKD*
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mRNA from alignment at Ecto-sp13_S_contig17711:1376..1976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17711.5360.1 ID=mRNA_Ecto-sp13_S_contig17711.5360.1|Name=mRNA_Ecto-sp13_S_contig17711.5360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=601bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17711:1376..1976+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGAGCTTCAGCAGCGTTAACGTGTTGGATTACCCTCCGCTTCGAGA GGGCATCAAGACATTCTCGTGAGTCTTACGTACGTACAAAAGATGGCAGC ATTGGTGACTGAGCCGGTCTTTCTTGGGCAGAAACCAGCAGCACCCACCG CCCACCTAGTAGTGTGCACTACCCCCATCGTCAGGTATTGTGCGCTGCTT CCATTTTTTCTGCATGAGAGTGCAAGTTGCTGCGTGGTCCGTTTCCAGCA CGACTTTCAGTCGAATGGCAGTCGCAGGGTATAACTGCAGGGCAAGAAGA GCGTAACCCGACCATTAAGGTTTGGATTCGAAATATTGGTGGGAGTACGG TGGCACCTGCTCTAGTTAACGCTCTCCCTGCTGACGACAATGTATGTTTT CATCACCTGGGTGTTGGACCCTGTGACTCATTCCTACCCACGCGGCCGAT TTATTTTCGTAACGCCAAATTCAGGGAGTGGCCCACCATCCCGCAGTTGT ACGTTAAGGGAGAGTTCGTCGGGGGGTGCGACATTTTGACTCAGCTTCAC CAGTCCGGCGACCTAGAAACCATGCTCAAGGAGGCCAAGCTCAAGGATTG A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17711:1376..1976+

>mRNA_Ecto-sp13_S_contig17711.5360.1 ID=mRNA_Ecto-sp13_S_contig17711.5360.1|Name=mRNA_Ecto-sp13_S_contig17711.5360.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17711:1376..1976+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGAGCTTCAGCAGCGTTAACGTGTTGGATTACCCTCCGCTTCGAGA
GGGCATCAAGACATTCTCGGAGTGGCCCACCATCCCGCAGTTGTACGTTA
AGGGAGAGTTCGTCGGGGGGTGCGACATTTTGACTCAGCTTCACCAGTCC
GGCGACCTAGAAACCATGCTCAAGGAGGCCAAGCTCAAGGATTGA
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