mRNA_Ecto-sp13_S_contig17661.5343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17661.5343.1
Unique NamemRNA_Ecto-sp13_S_contig17661.5343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17661.5343.1 vs. uniprot
Match: A0A6H5L8K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K1_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 4.480e-112
Identity = 165/173 (95.38%), Postives = 167/173 (96.53%), Query Frame = 2 
Query:   83 MSSAT-VAGDSGEAPAAAAPPMTTWADESIERYTNPIAFARKNTPTPTPELQNEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTGEIPVRALARGEGGVHVLR 598
            MSSAT VAGDSGEAPAAA  PMTTW DESIERY+NP+AFARKNTP PTPELQ EVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTGEIPVRALARGEGGVHVLR
Sbjct:    1 MSSATAVAGDSGEAPAAAGQPMTTWVDESIERYSNPVAFARKNTPMPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTGEIPVRALARGEGGVHVLR 173
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BLAST of mRNA_Ecto-sp13_S_contig17661.5343.1 vs. uniprot
Match: D7FVY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY9_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 3.910e-70
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = 2 
Query:  218 PTPELQNEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTG 544
            PTPELQ EVSLAVPGGKNAKLEIHLLKERSFWSKVS+FWTFRL+DVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQ+PIMGGSWITKTDFGRLEIKIVPYWTG
Sbjct:    2 PTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSIFWTFRLSDVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQRPIMGGSWITKTDFGRLEIKIVPYWTG 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17661.5343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8K1_9PHAE4.480e-11295.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY9_ECTSI3.910e-7096.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17661contigEcto-sp13_S_contig17661:183..3221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size599
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002670.1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.4498067-CDS-Ecto-sp13_S_contig17661:182..2341681462917.4498067-CDS-Ecto-sp13_S_contig17661:182..234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17661 183..234 -
1681462917.458445-CDS-Ecto-sp13_S_contig17661:560..6881681462917.458445-CDS-Ecto-sp13_S_contig17661:560..688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17661 561..688 -
1681462917.4677453-CDS-Ecto-sp13_S_contig17661:1677..18121681462917.4677453-CDS-Ecto-sp13_S_contig17661:1677..1812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17661 1678..1812 -
1681462917.4770153-CDS-Ecto-sp13_S_contig17661:2938..31391681462917.4770153-CDS-Ecto-sp13_S_contig17661:2938..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17661 2939..3139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.4857132-UTR-Ecto-sp13_S_contig17661:3139..32211681462917.4857132-UTR-Ecto-sp13_S_contig17661:3139..3221Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17661 3140..3221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17661.5343.1prot_Ecto-sp13_S_contig17661.5343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17661 183..3139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17661.5343.1

>prot_Ecto-sp13_S_contig17661.5343.1 ID=prot_Ecto-sp13_S_contig17661.5343.1|Name=mRNA_Ecto-sp13_S_contig17661.5343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MSSATVAGDSGEAPAAAAPPMTTWADESIERYTNPIAFARKNTPTPTPEL
QNEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQM
VVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVP
YWTGEIPVRALARGEGGVHVLR
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mRNA from alignment at Ecto-sp13_S_contig17661:183..3221-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17661.5343.1 ID=mRNA_Ecto-sp13_S_contig17661.5343.1|Name=mRNA_Ecto-sp13_S_contig17661.5343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3039bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17661:183..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGTCCCAAGGTCCCTGTGCGTGTAGTGAAGCAGGGGGATAGAGTAAA
ACAAGGACCAAAGAGCATTCAAGCCAGCGAGCATGAGCTCCGCAACTGTT
GCTGGAGATTCCGGGGAAGCACCTGCTGCTGCTGCTCCACCAATGACCAC
TTGGGCTGACGAGTCGATCGAGCGATACACCAACCCCATAGCGTTCGCCA
GGAAGAACACACCGACTCCTACGCCCGAGTTACAAAATGAGGTATCCCTC
GCCGTTCCAGGGGGGAAGAACGCCAAACTCGAGGTGCGATAGGTGCATGC
ACCTCCGTCATCAAGTGTGGTTTGAGCCAGCATATGCAGAGCTCGCGCAT
CGGATGATAAAGCAGCAGTATTATAGCAGAGCCGCATGGAGCAGCAGCAC
GTCTCTCTGTCCGTCAATTCGATTGAAGACTCTGGCTGGCGCGAGTGTTG
TGGTCATCAGCTGCAGCTTTGTGCTTCTTGTCGTCAGATGGCTTGCATTA
TACGCTGTTGTACGACGTGGTGGTTCCTGCAAGACGTGTGCCAGGTAGTC
GAACGGTAGATTCAAAGTAGATTCAAAAACAGGCTTCTTCATGGTTTTCC
CACAGGCGCACACGCGTATGCCTGCAGCCGTATCCTGAAGATTGTACACC
ACCACGCACATCCCCTCAGAGGTAGTGTTTGCTGTTCTGGGCTCCGGGCG
TGTAATGAATTGTTAGTTCTCGCGGATATGCTGTTTTTCAGCCGTGAAAT
TGGAATCGCGTCCAAAAAGGTTATTTGCTTCTGACAACGCCGCCACTGCG
CGAAAACGGTCCACCGGTTTGGGTCTCTGTTGAGTTGTGAACGAGTTGGG
GAAGTCCAGAGCATACAAGTAAAGAAGTTTGGCGGTTTTGCTTTTATGGT
GCAGTAGCCTCCCTTGTTTCCATGGCCTTCTCTGCCCCCCCTCTTCGACA
CAAACGGAATAGATTCCCCATTCCACAAGCTCAATTCTTGATTACTACGT
AAATTTGAGTAGAAGCCAAGTACTCCGCCTCTACAGAGAACAATGTGCTA
TACATGGTTGTCGTTGTCAAGTTGGTACCAGTTATCACGAGTCGCTTTAG
TTTCCATCTACACTAGGCCGTGCCTCTGTAGCCGAAGACATGCAGTTACA
ACATGGAAGGATTTATAAACCAACGTTAACCGCGCGCATCGTGCAGGCAT
AGAGGCGCTCTCTTCCTGACGGCATCTTTCTACCAAAAAGCGTCCTGAAG
ACACATGCCTTCCGAGGCAGGACGTTTACTCTCACGTTTGCACCATGTAG
TGAACGTTCGAGTGGGCACTCAAAATTGTTGCGTGGAGAGTTTTTCGCCC
GGCTCCAGGCTCGCCAGGCGTTTTTTCCGACTACTCGCTTTTCTGCCCGT
CGTGATCAGATTCACCTGCTGAAGGAGCGATCGTTCTGGAGCAAAGTTTC
GCTTTTCTGGACGTTCCGGTTGGCAGATGTCGAAGGAGATGACAACGCCG
AACAGATGGTGGTGGCGCTTGTCTTCGACAGTTGGACGGGATCGGTGAGC
CAGGCGTAGTTTCTTGTTGAGGGAAGCCTGTGGAATACACCTAGTTTCAG
AGGGAAACGCAAACTCATGTTTTTGGCCGGAAACAGGTTGATCGACTAAG
GGCCGTACTCCTAAGACCGGGTCGGAGGGATGTAATCGTTAGATCAGTCT
ATTCAGGAGTTCGTTCGTTCATGGCGCCTTTTTGGAGAGCGCCGGAGACG
TGATTGGACGTGCGCACGAAGGCGCCCGAGGACATTAACTCACTGTGCCT
GAAGGCTGTAAGAGTTCGAACCCCACCGAAAGAGAGTTAGAAATGCAGCC
GTTTCGAAGCGATGTCGACGTTCGTCGCTTGAAAACGCGTGCACACGACA
AAATTTGAATATCTGCAAAACAGGAGTGTGCCGAAACACTACACTTTCTC
GATCTGTCGTAGACCGGGTCGGACGGAGTTATGTTTGAATTTAGTCAGCA
ACAGCGAAGAGGATCGGTTGCACTTGCCGGCAATAAAAGCTTGAGTTCGC
TCAAAGCATTCCCGATGGGATAGGGCTATCGGTGCCGCCGTGTATTCAAA
CATGATATCCAAAGGAACACGTTATCCTCGTGATCGTAGACAGAGGAGGA
GCTTTATGCCGCCACGATTGCCTTGGCTTGTCACCCTCTTGGCCATCACG
TTATGTCTACAACTCTGCTCTGTACACAAAACGCCAGTGTAGCGGCTTCG
GCAGAACGTTGCAAGCCCGCATTGATTGACAACTAACAAAGAAAGCACCA
GCAAGCAACCGAATGCTCGAAAAAATATGTTGTGGGCAGTAGATGACACT
TTCGATACTTTGTCACGATGCCGAGAGATTTGCTTTCGCTACTGCACGTT
TTTAGTTAGGAGCGAGGTCCTTCGCTCAGGAATTCGACACTTACCGTCTC
GCTGGCTCCCTGCTGTCGCTGTCACTTGCCGCCTCTCGCTTGCCCCCTCT
TGTCGTCGTGGGCGCGTTACGTGTGAACTGCAGATTGAGATAAGCGAAAA
CGCGATCGTCAAGGTAGATGAAATCCAAAAGCCAATAATGGGCGGCTCTT
GGATCACAAAGACTGATTTCGGCCGGTTGGAGATCAAGATCGTGCCGTAC
TGGACAGGCGAGTAGTTATTTGTGGTGTGTTACGTGCCAGGAATCCTTTC
AACGCCGCTTGTATATTGTGGATTCGTCCATGGCGAGCAATGAACACAGC
TAGTGAAGGCGAACGAAGCCACACGGTTTATGGTAGATGGCACTTTTTAC
TCTGGGATGGACTATGTGCTGCAGGCGCAGGACCAACGCGAAGGGAATAC
CACAGGCCGTCATATTTATTTACCTAGTCTCTCAAACGGCGGTAGTATTC
TCCGCCGCTGGGGGTTCTCGAAAAGATGCAACTAAGTATTTCGCCTGTGC
CTGGCCGCCCCATGTCGGCTTTGACCTTGCAACACAGGATACCAGTACGA
GCTTTGGCACGAGGGGAAGGAGGTGTACACGTTCTTCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17661:183..3221-

>mRNA_Ecto-sp13_S_contig17661.5343.1 ID=mRNA_Ecto-sp13_S_contig17661.5343.1|Name=mRNA_Ecto-sp13_S_contig17661.5343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17661:183..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTCCGCAACTGTTGCTGGAGATTCCGGGGAAGCACCTGCTGCTGC
TGCTCCACCAATGACCACTTGGGCTGACGAGTCGATCGAGCGATACACCA
ACCCCATAGCGTTCGCCAGGAAGAACACACCGACTCCTACGCCCGAGTTA
CAAAATGAGGTATCCCTCGCCGTTCCAGGGGGGAAGAACGCCAAACTCGA
GATTCACCTGCTGAAGGAGCGATCGTTCTGGAGCAAAGTTTCGCTTTTCT
GGACGTTCCGGTTGGCAGATGTCGAAGGAGATGACAACGCCGAACAGATG
GTGGTGGCGCTTGTCTTCGACAGTTGGACGGGATCGATTGAGATAAGCGA
AAACGCGATCGTCAAGGTAGATGAAATCCAAAAGCCAATAATGGGCGGCT
CTTGGATCACAAAGACTGATTTCGGCCGGTTGGAGATCAAGATCGTGCCG
TACTGGACAGGCGAGATACCAGTACGAGCTTTGGCACGAGGGGAAGGAGG
TGTACACGTTCTTCGC
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