mRNA_Ecto-sp13_S_contig17658.5341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 169 bits (428), Expect = 4.170e-46 Identity = 89/131 (67.94%), Postives = 113/131 (86.26%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVA+VTAKVALKATSG++VD+SDFL+ V +GLV E+VD TLDE+ LLR+V+GEED +DMR+DTRAS+EALKKFM+KE+ +R K A+DGDGYV+F DKMKRV DG+G +VW+R ENV+QW ++ RS AA S
Sbjct: 1397 QVALVTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDS-RSNAALS 1526
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE) HSP 1 Score: 164 bits (416), Expect = 7.900e-46 Identity = 86/131 (65.65%), Postives = 110/131 (83.97%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVAL AT+G+ VD+SDFL+ V +GLVEE+VDRTLDE+ LLR V GE+ +DM+RDTRAS+EALK FME EE RRK A+DGDGY++F ++MKRV +G+G +VWVR +NV++W E+ RSTAAP+
Sbjct: 391 QVAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLES-RSTAAPT 520
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 163 bits (413), Expect = 3.950e-44 Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAP 390
QVAVVTAKVALKAT+G++VD+S+FL+ V EG VEEV D TLDEE L RVV+GEE A +D++RDTR S+EALKKFM+KE NRRK AK+GDGY++F +KM+R DGKG +VWVR ENV++WR++L STA+P
Sbjct: 800 QVAVVTAKVALKATAGLDVDISEFLQAVKEGAVEEVADCTLDEEALSRVVSGEEVAGADLQRDTRVSYEALKKFMDKE-LNRRKNAKEGDGYIDFREKMQRESDGKGGIVWVRIENVQKWRDSL-STASP 927
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.040e-43 Identity = 81/128 (63.28%), Postives = 108/128 (84.38%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTA 384
QVAVVTAKVAL AT+G+ V++S+FL+ V +GL +E+VDR+LDE+ LLRVV+GEED D+DM+ DTRAS+EALKK M+KE+ R K A+DGDGY++F DKMKRV DG+G +VWVR ENV++W ++ +TA
Sbjct: 1115 QVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTA 1242
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE) HSP 1 Score: 153 bits (386), Expect = 2.210e-43 Identity = 80/131 (61.07%), Postives = 111/131 (84.73%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVAL AT+G++VD+S+FL+ V +GLV E+VDRTLDE LLR V+G++D ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++ S AAP+
Sbjct: 167 QVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 295
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 161 bits (407), Expect = 2.790e-43 Identity = 83/131 (63.36%), Postives = 110/131 (83.97%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVAL AT+G+ VD+SDFL+ V +GLVEE+VDRTLD+E LLR V G+++ +D++RDTRAS+EALKKFM+KE+ R K +DGDGY++F D+MKRV DG+G +VWVR ENV++W ++ RS AAP+
Sbjct: 1182 QVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDS-RSIAAPT 1311
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 2.340e-42 Identity = 80/131 (61.07%), Postives = 112/131 (85.50%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVAL AT+G++VD+S+FL+ V +GLV E+VDRT+DEE LLR V+G++D ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++ S AAP+
Sbjct: 835 QVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 964
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 157 bits (396), Expect = 8.340e-42 Identity = 88/131 (67.18%), Postives = 104/131 (79.39%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVAL AT+G+ VD SDFL+ V +GLV E+VDRTLDE L RVV GEE +DM+R TRAS+EALKKFM+KEE R K AKDGDGYV+F D+MKRV DGKG +VWVR +NV++W L S AAP+
Sbjct: 963 QVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKW---LESRAAPT 1090
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.620e-41 Identity = 79/131 (60.31%), Postives = 112/131 (85.50%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTA+VAL AT+G++V++S+FL+ V +GLV E+VDRTLDEE LLR V+G++D ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++ S AAP+
Sbjct: 667 QVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 796
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 152 bits (385), Expect = 2.540e-40 Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1
Query: 1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
QVAVVTAKVALKATSG++VD+S+FL+ V +G V+E+VD+TLDE+TLLRVV GEEDA +MR++TRAS+EAL+ FM K E RRK A+DGDGYV+F D M+R+ DG+G VWVR ENVE+W ++ S A PS
Sbjct: 1008 QVAVVTAKVALKATSGLDVDLSNFLKDVQDGFVDELVDQTLDEDTLLRVVLGEEDAGFNMRKETRASYEALRGFMGKLE--RRKDARDGDGYVDFRDNMQRLSDGRGGEVWVRNENVERWLDS-HSNAVPS 1135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17658.5341.1 >prot_Ecto-sp13_S_contig17658.5341.1 ID=prot_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp MRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLback to top mRNA from alignment at Ecto-sp13_S_contig17658:2804..3205+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17658.5341.1 ID=mRNA_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17658:2804..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17658:2804..3205+ >mRNA_Ecto-sp13_S_contig17658.5341.1 ID=mRNA_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17658:2804..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |