mRNA_Ecto-sp13_S_contig17658.5341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17658.5341.1
Unique NamemRNA_Ecto-sp13_S_contig17658.5341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.170e-46
Identity = 89/131 (67.94%), Postives = 113/131 (86.26%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVA+VTAKVALKATSG++VD+SDFL+ V +GLV E+VD TLDE+ LLR+V+GEED  +DMR+DTRAS+EALKKFM+KE+ +R K A+DGDGYV+F DKMKRV DG+G +VW+R ENV+QW ++ RS AA S
Sbjct: 1397 QVALVTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDS-RSNAALS 1526          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.900e-46
Identity = 86/131 (65.65%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVAL AT+G+ VD+SDFL+ V +GLVEE+VDRTLDE+ LLR V GE+   +DM+RDTRAS+EALK FME EE  RRK A+DGDGY++F ++MKRV +G+G +VWVR +NV++W E+ RSTAAP+
Sbjct:  391 QVAVVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLES-RSTAAPT 520          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 3.950e-44
Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAP 390
            QVAVVTAKVALKAT+G++VD+S+FL+ V EG VEEV D TLDEE L RVV+GEE A +D++RDTR S+EALKKFM+KE  NRRK AK+GDGY++F +KM+R  DGKG +VWVR ENV++WR++L STA+P
Sbjct:  800 QVAVVTAKVALKATAGLDVDISEFLQAVKEGAVEEVADCTLDEEALSRVVSGEEVAGADLQRDTRVSYEALKKFMDKE-LNRRKNAKEGDGYIDFREKMQRESDGKGGIVWVRIENVQKWRDSL-STASP 927          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.040e-43
Identity = 81/128 (63.28%), Postives = 108/128 (84.38%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTA 384
            QVAVVTAKVAL AT+G+ V++S+FL+ V +GL +E+VDR+LDE+ LLRVV+GEED D+DM+ DTRAS+EALKK M+KE+  R K A+DGDGY++F DKMKRV DG+G +VWVR ENV++W ++  +TA
Sbjct: 1115 QVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTA 1242          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 2.210e-43
Identity = 80/131 (61.07%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVAL AT+G++VD+S+FL+ V +GLV E+VDRTLDE  LLR V+G++D  ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++  S AAP+
Sbjct:  167 QVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 295          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.790e-43
Identity = 83/131 (63.36%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVAL AT+G+ VD+SDFL+ V +GLVEE+VDRTLD+E LLR V G+++  +D++RDTRAS+EALKKFM+KE+  R K  +DGDGY++F D+MKRV DG+G +VWVR ENV++W ++ RS AAP+
Sbjct: 1182 QVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDS-RSIAAPT 1311          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.340e-42
Identity = 80/131 (61.07%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVAL AT+G++VD+S+FL+ V +GLV E+VDRT+DEE LLR V+G++D  ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++  S AAP+
Sbjct:  835 QVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 964          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 8.340e-42
Identity = 88/131 (67.18%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVAL AT+G+ VD SDFL+ V +GLV E+VDRTLDE  L RVV GEE   +DM+R TRAS+EALKKFM+KEE  R K AKDGDGYV+F D+MKRV DGKG +VWVR +NV++W   L S AAP+
Sbjct:  963 QVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKW---LESRAAPT 1090          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.620e-41
Identity = 79/131 (60.31%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTA+VAL AT+G++V++S+FL+ V +GLV E+VDRTLDEE LLR V+G++D  ++++RDTRAS+EALKKFM+KE+ +R K A+DGDGY++F D+MKRV DG+G +VWVR +NV++W ++  S AAP+
Sbjct:  667 QVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDS-HSIAAPT 796          
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.540e-40
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 QVAVVTAKVALKATSGIEVDVSDFLRVVNEGLVEEVVDRTLDEETLLRVVAGEEDADSDMRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRLVWVRTENVEQWRETLRSTAAPS 393
            QVAVVTAKVALKATSG++VD+S+FL+ V +G V+E+VD+TLDE+TLLRVV GEEDA  +MR++TRAS+EAL+ FM K E  RRK A+DGDGYV+F D M+R+ DG+G  VWVR ENVE+W ++  S A PS
Sbjct: 1008 QVAVVTAKVALKATSGLDVDLSNFLKDVQDGFVDELVDQTLDEDTLLRVVLGEEDAGFNMRKETRASYEALRGFMGKLE--RRKDARDGDGYVDFRDNMQRLSDGRGGEVWVRNENVERWLDS-HSNAVPS 1135          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17658.5341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LCS7_ECTSI4.170e-4667.94LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSY4_9PHAE7.900e-4665.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L846_9PHAE3.950e-4467.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC3_ECTSI2.040e-4363.28LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L1D3_9PHAE2.210e-4361.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI2.790e-4363.36LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K1K4_9PHAE2.340e-4261.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI8.340e-4267.18LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5K516_9PHAE1.620e-4160.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI2.540e-4064.89LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17658contigEcto-sp13_S_contig17658:2804..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score97.8
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D8LCS7
Model size402
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.3534086-UTR-Ecto-sp13_S_contig17658:2803..29801681462917.3534086-UTR-Ecto-sp13_S_contig17658:2803..2980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17658 2804..2980 +
1681462917.3758876-UTR-Ecto-sp13_S_contig17658:3202..32051681462917.3758876-UTR-Ecto-sp13_S_contig17658:3202..3205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17658 3203..3205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462917.365392-CDS-Ecto-sp13_S_contig17658:2980..32021681462917.365392-CDS-Ecto-sp13_S_contig17658:2980..3202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17658 2981..3202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17658.5341.1prot_Ecto-sp13_S_contig17658.5341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17658 2981..3202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17658.5341.1

>prot_Ecto-sp13_S_contig17658.5341.1 ID=prot_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MRRDTRASFEALKKFMEKEESNRRKTAKDGDGYVNFEDKMKRVDDGKGRL
VWVRTENVEQWRETLRSTAAPSG*
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mRNA from alignment at Ecto-sp13_S_contig17658:2804..3205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17658.5341.1 ID=mRNA_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17658:2804..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCAGTGGTGACCGCGAAAGTGGCGCTGAAAGCAACGTCGGGGAT AGAGGTGGATGTTTCGGACTTTCTACGGGTCGTCAATGAGGGTTTGGTCG AGGAGGTAGTCGACCGTACTCTCGACGAGGAAACTCTGCTCCGTGTGGTG GCTGGGGAGGAGGATGCCGACAGCGATATGCGAAGGGACACGAGGGCCTC GTTTGAAGCTCTGAAGAAGTTCATGGAGAAGGAGGAAAGTAACAGGCGTA AAACTGCCAAGGACGGTGACGGCTATGTGAACTTCGAGGATAAAATGAAG CGCGTCGACGATGGAAAGGGAAGACTGGTGTGGGTTAGGACAGAAAATGT TGAACAGTGGCGGGAAACCTTGCGTTCAACAGCTGCGCCATCGGGGTAGA TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17658:2804..3205+

>mRNA_Ecto-sp13_S_contig17658.5341.1 ID=mRNA_Ecto-sp13_S_contig17658.5341.1|Name=mRNA_Ecto-sp13_S_contig17658.5341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17658:2804..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAAGGGACACGAGGGCCTCGTTTGAAGCTCTGAAGAAGTTCATGGA
GAAGGAGGAAAGTAACAGGCGTAAAACTGCCAAGGACGGTGACGGCTATG
TGAACTTCGAGGATAAAATGAAGCGCGTCGACGATGGAAAGGGAAGACTG
GTGTGGGTTAGGACAGAAAATGTTGAACAGTGGCGGGAAACCTTGCGTTC
AACAGCTGCGCCATCGGGGTAG
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