mRNA_Ecto-sp13_S_contig17632.5332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17632.5332.1
Unique NamemRNA_Ecto-sp13_S_contig17632.5332.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 6.460e-127
Identity = 205/276 (74.28%), Postives = 211/276 (76.45%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKE--------------------------------------------------SIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKATLTSALGAGRGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSL 678
            QGMHEVLAPLILVLEKE                                                  SIVNGEPLNAGTHPAFAAILGHGST EDLEADAFWLFSAVM+GLERFYEHGEKAT TSALGAGRGG E G VDSPVVEMCKRLQG RMRAADP+LQQHLSHLDISPQAG        +++LYGMKWARLMFGREFRVEGVLVLWDHIFASSWI+GQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQ VSTAISLSLSL
Sbjct:  180 QGMHEVLAPLILVLEKEVAAATRAEAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTSALGAGRGGGEGGSVDSPVVEMCKRLQGVRMRAADPELQQHLSHLDISPQAG--------YLKLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQDVSTAISLSLSL 447          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 4.480e-52
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 1
Query:  403 FMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSL 678
            + QLYGMKWARLMFGREFRVEGVLVLWDHIFASSWI+GQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSL
Sbjct:  138 YRQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSL 229          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A8H7PNJ4_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PNJ4_9FUNG)

HSP 1 Score: 124 bits (312), Expect = 3.890e-29
Identity = 75/225 (33.33%), Postives = 118/225 (52.44%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKAT------------LTSALGAGRGGREWGGVD-SPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPP 636
            QGMHE+LAP+ LVL  E +  G+    G   +   ++      + LE D++ LF  +M+G +++YE  ++ +            L   +G G  G+       +P+V+ C+R+Q   +++ DP L QHL  L I PQ             LYG++W RL+FGREF +E VL LWD IFA       P +   +E + + +++ IR +++  +   CL LLMRYPP
Sbjct:  163 QGMHELLAPIFLVLNTEGVDIGDGSLVGPADSSTKLMAQVLDKKYLEHDSYALFERLMSGAKKWYEFNDEVSTRLTPAKKKELDLIDPMGLGGTGKTAPAAQLTPIVKSCRRIQHQLLKSTDPALYQHLETLGIEPQ-------------LYGIRWIRLLFGREFSIENVLELWDAIFAED-----PSL-NIVEYICLVLLLRIRDKMVDGEYAECLTLLMRYPP 368          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A397T3M7_9GLOM (Rab-GAP TBC domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T3M7_9GLOM)

HSP 1 Score: 119 bits (299), Expect = 2.180e-27
Identity = 81/233 (34.76%), Postives = 118/233 (50.64%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVN--GEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKATLTSALGAGRGGR-EWGGVD----------SPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAI 660
            QGMHE+LAP++ V++KESI N  G  +  G        L     S+ +E D F LFSA+M   + +YE+ ++      +   +G   E+  +           +PVV  C ++    +R  D +L  HL +L+I PQ             LYG++W RL+FGREF +  VLVLWD +FA      +      ++ V VAM++ IR +LL  D   CL +LMRYPP   V   I
Sbjct:  175 QGMHELLAPILWVVDKESIPNSNGYAVENGEDTIIKQTLN----SDFVEHDTFALFSALMKAAKVYYEYNDEVFNRRPVKRAQGSDLEYARIIKDAQAEAAKLTPVVMKCSKIYDEYLRTIDSELYSHLKNLEIEPQ-------------LYGIRWIRLLFGREFPLNKVLVLWDGMFA------EDPTLRIVDFVCVAMMLLIRDELLESDYAECLSMLMRYPPISDVEVLI 384          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: U9TLX3_RHIID (Rab-GAP TBC domain-containing protein n=9 Tax=Rhizophagus TaxID=1129544 RepID=U9TLX3_RHIID)

HSP 1 Score: 119 bits (298), Expect = 2.940e-27
Identity = 79/231 (34.20%), Postives = 118/231 (51.08%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGE----KATLTSALGAG-------RGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAI 660
            QGMHE+LAP++ V++KESI N          +   I+     ++ +E D F LFSA+M   + +YE+ +    K  +  A G+        +  +      +PV   C ++    ++  DP+L +HL  L+I PQ             LYG++W RL+FGREF +  VL+LWD IFA      +      +E V VAM++ IR++LL  D T CL +LMRYPP       I
Sbjct:  161 QGMHELLAPILWVIDKESIPNSS--GYAVENSEDTIIKQTLNADYVEHDTFALFSALMKSAKEYYEYNDEIFNKKPVKRAQGSDLEYARLIKNNQAEVAKATPVFRKCNKIY-EYLQIIDPELYKHLIDLEIEPQ-------------LYGIRWIRLLFGREFPLNKVLILWDGIFA------EDPALRIVEYVCVAMMLLIRNELLDSDYTECLSMLMRYPPTSDTEVLI 369          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A2Z6QHF3_9GLOM (Rab-GAP TBC domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QHF3_9GLOM)

HSP 1 Score: 119 bits (298), Expect = 2.950e-27
Identity = 80/229 (34.93%), Postives = 120/229 (52.40%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGE----KATLTSALGAG-------RGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPP--DQGV 648
            QGMHE+LAP++ V++KESI +        +     I+     +E +E D F LFSA+M   + +YE+ +    K  +  A G+        +  +      +PV   C ++    ++  DP+L + L+ L+I PQ             LYG++W RL+FGREF ++ VL LWD IFA      +      +++V VAM++ IR  LL  D TGCL +LMRYPP  D GV
Sbjct:  161 QGMHELLAPILWVVDKESIPSSNGYAVENNED--TIIKQTLNAEYVEHDTFALFSALMKAAKEYYEYNDEIFNKKPVKRAQGSDLEFARLIKNNQAEVAKATPVFRKCNKIY-EYLQTIDPELHERLNELEIEPQ-------------LYGIRWIRLLFGREFPLDKVLTLWDGIFA------EDPTLRIVDHVCVAMMLLIRDDLLKSDYTGCLSMLMRYPPTSDTGV 367          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A7I4YGT4_HAECO (Rab-GAP TBC domain-containing protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I4YGT4_HAECO)

HSP 1 Score: 117 bits (294), Expect = 6.900e-27
Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFA----AILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKATLTSALGAGRGGREWGGVDSPVVEMCKRLQ--GARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSL 672
            QGMHE+LAPLI VL  +       L  G     +    +IL H    + LE+D++ +F  +M  + ++YE G +   T       G        +P  ++ + L   G R++  DP+L +HL+ LDI PQ             LYG++W RL+FGREF +  +L +WD +     +  +P V   +E V +AM+V IRH LL  D  GCLQ LMRYPP   VST I  +L
Sbjct:  159 QGMHEILAPLIFVLFSDQQSFCHCLETGGLTTLSEEDRSILSHVYDPKYLESDSYGMFCEMMLEVTKWYEDGSQPATTPKPFNESGPFMRVQDAAPTNQVMRELVAIGERLQCVDPELAEHLNSLDIPPQ-------------LYGIRWLRLLFGREFAIHDLLYVWDVL-----VCDRP-VARMVECVFLAMLVQIRHLLLQSDYGGCLQYLMRYPPIVDVSTFIQQAL 369          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A3N2PMH0_9PEZI (WD repeat domain-containing protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PMH0_9PEZI)

HSP 1 Score: 117 bits (293), Expect = 1.310e-26
Identity = 77/212 (36.32%), Postives = 118/212 (55.66%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKATLTSALGAGRGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPP 636
            QGMHE+LAP++ VL ++++   +  +  T     AIL     S+ +E DAF LFS +M   + FYE  +  T +++  A RG  E     S +VE  K +    +   DP+L +HL  +++ PQ             ++ ++W RL+FGREF  + +LVLWD IFA       P + E I+ + VAM++ IR +LL  D + CLQLL++YPP
Sbjct:  158 QGMHELLAPVVHVLHEDAV---DRRSTTTDTQVDAILLDVFDSDYIEHDAFALFSKIMERAQVFYEVKDSITRSASASASRGQAE----TSAIVEKSKFIHEDCLARVDPELARHLKDVEVLPQ-------------IFLIRWIRLLFGREFPFDQLLVLWDTIFAID-----PSL-ELIDLICVAMLIRIRWKLLEADYSVCLQLLLKYPP 343          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A397GIP1_9GLOM (Rab-GAP TBC domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GIP1_9GLOM)

HSP 1 Score: 116 bits (291), Expect = 2.600e-26
Identity = 79/230 (34.35%), Postives = 118/230 (51.30%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESI--VNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGE-------KATLTSALGAGRGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAIS 663
            QGMHE+LAP++ V++ ESI   NG  +          I+     S+ +E D F LFS++M   +  YE+ +       K +  + L   R  +E     +PVV  C ++    ++  DP L  HL++L+I PQ             LYG++W RL+FGREF +E VL+LWD +FA      +      ++ V + M++ IR +LL  D  GCL  LMRYPP   V   +S
Sbjct:  164 QGMHELLAPILWVVDDESIPSANGYAVENDE----ITIIRQTLNSDYVEHDTFVLFSSLMKAAKINYEYNDEVFNRRPKRSQGTDLDYSRMIKEEAAKLTPVVMRCNKIYEEYLQKIDPDLFLHLNNLEIEPQ-------------LYGIRWVRLLFGREFTLEKVLILWDGMFA------EDPTLRIVDFVCLTMMLLIRDELLESDYAGCLSKLMRYPPIDEVELLVS 370          
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Match: A0A1L9SW47_9EURO (Rab-GAP TBC domain-containing protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SW47_9EURO)

HSP 1 Score: 116 bits (290), Expect = 3.220e-26
Identity = 75/214 (35.05%), Postives = 112/214 (52.34%), Query Frame = 1
Query:    1 QGMHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFWLFSAVMNGLERFYEHGEKATLTSALGAGRGGREWGGVDSPVVEMCKRLQGARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYP-PD 639
            QGMHE+LAP++ V+++++ V+   L  G       +L      + +E D+F LF  VM  L  +YEH E+ +++  +G            SP+V  C+ LQ + + A DP L  HL  +DI PQ             ++  +W RL+FGREF  + VLV+WDH+FA           + +E   VAM++ IR QLL  D +  L  L+RYP PD
Sbjct:  157 QGMHEILAPILWVVDRDT-VDKSSLGDGLGEQNGDVLQL-LDPDYIEHDSFTLFCTVMQTLRVYYEHKEQRSISGQVGV-----------SPIVSRCQNLQTSMLAATDPDLSNHLQAVDILPQ-------------IFLTRWIRLLFGREFPFDDVLVVWDHLFAEGLRT------DLVEFFCVAMLLRIRWQLLEADYSTALSTLLRYPSPD 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17632.5332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGW7_9PHAE6.460e-12774.28Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D7FWI0_ECTSI4.480e-5296.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8H7PNJ4_9FUNG3.890e-2933.33Rab-GAP TBC domain-containing protein n=1 Tax=Umbe... [more]
A0A397T3M7_9GLOM2.180e-2734.76Rab-GAP TBC domain-containing protein n=1 Tax=Glom... [more]
U9TLX3_RHIID2.940e-2734.20Rab-GAP TBC domain-containing protein n=9 Tax=Rhiz... [more]
A0A2Z6QHF3_9GLOM2.950e-2734.93Rab-GAP TBC domain-containing protein n=2 Tax=Rhiz... [more]
A0A7I4YGT4_HAECO6.900e-2736.09Rab-GAP TBC domain-containing protein n=1 Tax=Haem... [more]
A0A3N2PMH0_9PEZI1.310e-2636.32WD repeat domain-containing protein n=1 Tax=Sodiom... [more]
A0A397GIP1_9GLOM2.600e-2634.35Rab-GAP TBC domain-containing protein n=1 Tax=Dive... [more]
A0A1L9SW47_9EURO3.220e-2635.05Rab-GAP TBC domain-containing protein n=1 Tax=Peni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17632contigEcto-sp13_S_contig17632:146..1710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score186.0
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D7FWI0
Preferred nameTBC1D5
Model size678
KEGG rclassRC00002,RC00078
KEGG koko:K01765,ko:K03843,ko:K18081,ko:K18469
KEGG ReactionR03428,R03429,R05973,R06238
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,map00510,map00513,map00562,map01100,map04070
KEGG ModuleM00055,M00132
Hectar predicted targeting categoryother localisation
GOsGO:0002090,GO:0002092,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009605,GO:0009893,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010604,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0023052,GO:0030100,GO:0030234,GO:0030695,GO:0030904,GO:0031000,GO:0031090,GO:0031156,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035612,GO:0036270,GO:0042147,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043547,GO:0043900,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045807,GO:0046907,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0060627,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:1901698,GO:1903664,GO:1903665,GO:1905394
Exons4
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1091@2759
EC2.4.1.132,2.4.1.257,2.7.1.159,3.1.3.64,3.1.3.95
Cds size672
COG Functional cat.H
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.6500268-UTR-Ecto-sp13_S_contig17632:145..1511681462916.6500268-UTR-Ecto-sp13_S_contig17632:145..151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17632 146..151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.6665597-CDS-Ecto-sp13_S_contig17632:151..1961681462916.6665597-CDS-Ecto-sp13_S_contig17632:151..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17632 152..196 +
1681462916.680209-CDS-Ecto-sp13_S_contig17632:340..6971681462916.680209-CDS-Ecto-sp13_S_contig17632:340..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17632 341..697 +
1681462916.6900923-CDS-Ecto-sp13_S_contig17632:905..10581681462916.6900923-CDS-Ecto-sp13_S_contig17632:905..1058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17632 906..1058 +
1681462916.7018054-CDS-Ecto-sp13_S_contig17632:1593..17101681462916.7018054-CDS-Ecto-sp13_S_contig17632:1593..1710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17632 1594..1710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17632.5332.1prot_Ecto-sp13_S_contig17632.5332.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17632 152..1710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17632.5332.1

>prot_Ecto-sp13_S_contig17632.5332.1 ID=prot_Ecto-sp13_S_contig17632.5332.1|Name=mRNA_Ecto-sp13_S_contig17632.5332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MHEVLAPLILVLEKESIVNGEPLNAGTHPAFAAILGHGSTSEDLEADAFW
LFSAVMNGLERFYEHGEKATLTSALGAGRGGREWGGVDSPVVEMCKRLQG
ARMRAADPKLQQHLSHLDISPQAGGRFGCGRRFMQLYGMKWARLMFGREF
RVEGVLVLWDHIFASSWIKGQPDVPECIENVAVAMVVSIRHQLLAEDCTG
CLQLLMRYPPDQGVSTAISLSLSL
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mRNA from alignment at Ecto-sp13_S_contig17632:146..1710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17632.5332.1 ID=mRNA_Ecto-sp13_S_contig17632.5332.1|Name=mRNA_Ecto-sp13_S_contig17632.5332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17632:146..1710+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTATGCACGAAGTCCTGGCCCCGCTCATCCTGGTACTGGAGAAAGA AGTCGCCGCGGCTGCACGGGCAGAGGCCATCGCTGGAGACTCCACTGCTG CGGCCACCGCTGCTGCCGTTGGGGAGGAGGGCGGGGCGGCAGCGGCGGCA GCAGCAGCAGTAGCAGCAGTGAAAACATCGCCGTGGGTAGGGAAGTCGAT CGTCAACGGGGAGCCGTTGAACGCGGGTACACACCCTGCCTTTGCCGCCA TCCTCGGACACGGCTCCACATCGGAAGACCTCGAAGCGGATGCTTTCTGG CTCTTCAGCGCCGTCATGAACGGACTGGAGAGGTTTTACGAGCACGGGGA GAAGGCTACCTTGACTTCGGCACTGGGAGCGGGCCGCGGCGGCAGGGAAT GGGGTGGCGTCGACTCACCTGTGGTGGAAATGTGCAAGCGGCTGCAGGGG GCGCGGATGCGAGCGGCCGACCCAAAGCTGCAGCAGCACCTGTCGCACCT CGACATTAGCCCTCAGGCAGGTGGCCGGTTTGGGTGCGGACGGAGGTTCA TGGTTGTTGTCGACCTACCCGTGGCAATGGTTTTGGTGCTCATAGGTTCT CTGGAAGTGATATTTCGTCCCACCAGAGCTCACGGGCTCGTGTTGGATGG TGTTGCTACTTTGGTACCGACTGCACTACAATATATCGGCCGTGACTTTG TTGGGTGGCGCGTATGTGTTGATCTATTGATCGTTCTGTTTCTCGGTGCT GTTCGTCGAGCAGCTTTACGGCATGAAGTGGGCGCGGCTGATGTTCGGGC GAGAGTTCCGCGTGGAAGGGGTGCTGGTCTTGTGGGATCATATCTTCGCT TCATCGTGGATCAAAGGTCAACCCGATGTGCCGGAGTGCATCGAGAACGT CGCCGTTGCCATGGTGCGTGCTTTTAATCAACCTGGTTTGACCCATCCTG TGTAAAGATCATATTATTTTTTGGGTGTACATTATCAGCGCTTGTTCCAC CATCACTCTTACGCCTTGTCCATGTGATGCATGCCGACCGATTTTCCTAG CCTGTCTGTCTTTCTGTTTATCACCGACACGTTTGTCGTTTGTACCCTTG CGGTTAGCACTGGTTGGACGTAGTACAACCCCCGTTAAAAACGATATGGA GTGTATGGTGTACTAGGGCATCTTCCAGGAGCGGGCGCTCGAACGAGCGG ATGACAAGGAGATATTTTGTAGCTTTGCACCGCCTTTGTTGCCGAGCGGG GGTCGCTGCTGTCTCGAGTAGGTGCTGCTGCGTCGTCTCAACCACACCCA TACATGCTTGCACCGACTACGCCTACATTTTCTGCTCCAAATAAGCTTCT CGGTCCTCCCCCTGTCTGTGCTGAGGCTCAAAAGACCCTCAAACCCTTAC ACTTATCCTTACCCCCCCCCGCCCCCTCTCCTCTTTCGAACAAATCAGGT TGTATCGATACGCCACCAGCTGCTGGCAGAAGACTGCACCGGTTGCCTGC AGCTCCTCATGCGGTACCCGCCAGACCAGGGTGTTTCCACCGCCATCTCC TTGTCCCTCTCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17632:146..1710+

>mRNA_Ecto-sp13_S_contig17632.5332.1 ID=mRNA_Ecto-sp13_S_contig17632.5332.1|Name=mRNA_Ecto-sp13_S_contig17632.5332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17632:146..1710+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGAAGTCCTGGCCCCGCTCATCCTGGTACTGGAGAAAGAATCGAT
CGTCAACGGGGAGCCGTTGAACGCGGGTACACACCCTGCCTTTGCCGCCA
TCCTCGGACACGGCTCCACATCGGAAGACCTCGAAGCGGATGCTTTCTGG
CTCTTCAGCGCCGTCATGAACGGACTGGAGAGGTTTTACGAGCACGGGGA
GAAGGCTACCTTGACTTCGGCACTGGGAGCGGGCCGCGGCGGCAGGGAAT
GGGGTGGCGTCGACTCACCTGTGGTGGAAATGTGCAAGCGGCTGCAGGGG
GCGCGGATGCGAGCGGCCGACCCAAAGCTGCAGCAGCACCTGTCGCACCT
CGACATTAGCCCTCAGGCAGGTGGCCGGTTTGGGTGCGGACGGAGGTTCA
TGCAGCTTTACGGCATGAAGTGGGCGCGGCTGATGTTCGGGCGAGAGTTC
CGCGTGGAAGGGGTGCTGGTCTTGTGGGATCATATCTTCGCTTCATCGTG
GATCAAAGGTCAACCCGATGTGCCGGAGTGCATCGAGAACGTCGCCGTTG
CCATGGTTGTATCGATACGCCACCAGCTGCTGGCAGAAGACTGCACCGGT
TGCCTGCAGCTCCTCATGCGGTACCCGCCAGACCAGGGTGTTTCCACCGC
CATCTCCTTGTCCCTCTCGCTG
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