mRNA_Ecto-sp13_S_contig17631.5331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17631.5331.1
Unique NamemRNA_Ecto-sp13_S_contig17631.5331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17631.5331.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.070e-24
Identity = 70/114 (61.40%), Postives = 75/114 (65.79%), Query Frame = 3 
Query:  126 ETGRFSLFASSTSSVSSRCATEVSPGAGSSDGSMPGGLVGDHRYNERQRRRPPATRQRQRRGRQHLLASNEAESGGAGGAGRGLAARGTNAKDDSIFMGEVSLSRASVLQGTSG 467
            + GRFS FASSTSSVSSRCA EVSP AGS    MPGGLVGDHRY+E+                    A+NE       GAGRG AAR TN KDDSIF GEVSLSRASVL+GTSG
Sbjct: 1840 DAGRFSSFASSTSSVSSRCAAEVSPSAGSXXXXMPGGLVGDHRYDEQXXXXXXXXXXXXXXXXXXXXANNE-------GAGRGRAARRTNTKDDSIFRGEVSLSRASVLKGTSG 1946
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BLAST of mRNA_Ecto-sp13_S_contig17631.5331.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 9.890e-7
Identity = 38/81 (46.91%), Postives = 45/81 (55.56%), Query Frame = 3 
Query:  225 MPGGLVGDHRYNERQRRRPPATRQRQRRGRQHLLASNEAESGGAGGAGRGLAARGTNAKDDSIFMGEVSLSRASVLQGTSG 467
            MPGGLVGDHRY+E+Q+R P                +NEA S      G   AAR T  KD+S+   EVS SRAS L+G SG
Sbjct:    1 MPGGLVGDHRYDEQQQRGPXXXXXXXXXXXXXXXXNNEAGSXXXXXPGSSRAARRTKMKDESVIGAEVSFSRASALKGMSG 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17631.5331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQE7_9PHAE6.070e-2461.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNF2_ECTSI9.890e-746.91Similar to photosystem II oxygen evolving complex ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17631contigEcto-sp13_S_contig17631:774..2174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.5
Seed ortholog evalue7.9e-07
Seed eggNOG ortholog2880.D7FNF2
Model size467
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.PsbP
EggNOG OGs2E2MJ@1,2S9US@2759
Ec32 ortholog descriptionSimilar to photosystem II oxygen evolving complex protein PsbP in Synechococcus
Ec32 orthologEc-01_005660.1
Cds size447
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.5841875-CDS-Ecto-sp13_S_contig17631:773..11261681462916.5841875-CDS-Ecto-sp13_S_contig17631:773..1126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17631 774..1126 -
1681462916.596217-CDS-Ecto-sp13_S_contig17631:2060..21541681462916.596217-CDS-Ecto-sp13_S_contig17631:2060..2154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17631 2061..2154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.60672-UTR-Ecto-sp13_S_contig17631:2154..21741681462916.60672-UTR-Ecto-sp13_S_contig17631:2154..2174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17631 2155..2174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17631.5331.1prot_Ecto-sp13_S_contig17631.5331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17631 774..2154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17631.5331.1

>prot_Ecto-sp13_S_contig17631.5331.1 ID=prot_Ecto-sp13_S_contig17631.5331.1|Name=mRNA_Ecto-sp13_S_contig17631.5331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MVHTMLTMVPIMVAVTNHYHHGVAAFNLGPRGVPVETGRFSLFASSTSSV
SSRCATEVSPGAGSSDGSMPGGLVGDHRYNERQRRRPPATRQRQRRGRQH
LLASNEAESGGAGGAGRGLAARGTNAKDDSIFMGEVSLSRASVLQGTSG
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mRNA from alignment at Ecto-sp13_S_contig17631:774..2174-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17631.5331.1 ID=mRNA_Ecto-sp13_S_contig17631.5331.1|Name=mRNA_Ecto-sp13_S_contig17631.5331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17631:774..2174- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGGAGCTCTAGACTTAGATGGTGCATACAATGCTGACAATGGTGCCG
ATCATGGTGGCCGTTACCAACCACTACCACCACGGCGTTGCTGCGTTCAA
CTTAGGGCCACGAGGTGCGTGCAGTGGCGTGTTGCGCCGAAGCACCACGT
AGCTGTGTATTTGGGAGCGTGCTGCGTGCGCTCTCCTTGCAATGGGGTGG
GCGCATGTTGTGTAAAGTACAAGTTGTAGGTCAGCAGTGAGTTGCAATAC
CACCAGCGAAGGGTGCAGATTTACATGCCCTTCCCGCCTTCCTGCAACAC
GATCAGCGGTACAGCAGTGTAAGTCTTCATGTGCACCTATCGTAGCAGAG
GTTAGCACACGTAACGAAGGCTTTGGCTACTTCAAGGTACGTCGCTCTTG
TCTCCGCCTCACCGTCTACGAGGGCTGTGGGAGAACAACGGTGTTTATTC
TCGACTAACGTTGCAGGGAGCACCATAGAGCAGTACACGGCGATTTACGT
ATATACTACGCGGACGAAAATCCAACAGCGTGTAGTTATCTCTACAGTCT
ACCGGCTGTAACAGTATTATTGCGTTTGTTAATGCTGTGGAATTGATGGT
CAACTATGCGCGTATCCTACGTTACTTGTAGCTTGTAGCAGAAGTCCGTG
CAATACATGTGCACGTGTTGTCAAGGGGGCCAAGTGGAGGTATCCTCACA
CCAACGGCGGTGCAGTCTAGCCTCGCAGAGTAGGCAGGCCCTGCTCTGCT
GCCGTGTAAGATGCTGAACCAGGTTCGGCGCGACGTCTTCGTTAAGGGAG
AGGGTAGGTCGTGACTTACCGCAAGAGGACCTGCTGTACTACTGTGGCGT
GGAGCCGCCGGTGCCGATTGCGTCTTTTGTCTTGTGAGGTGGGGAGGCGG
TGACAGAACGCCCAACGTGAGAGTCGGCCTGCAGCAATTCATCTGAGCAC
ACGTGTGTATGGCCGTCCCTACCGAACGTTTCTCATCCTCATCTCCTACC
TTGACGTTGCCGCTGCTGCTTGGTACCCACGTCCCACGCGCCGCGCAGGG
GTACCAGTCGAAACAGGCCGATTCTCTTTGTTCGCGTCGTCGACGTCCTC
CGTCTCCTCCCGATGTGCCACCGAAGTTAGCCCTGGCGCCGGCAGCAGCG
ACGGCAGCATGCCTGGCGGCCTCGTTGGCGACCACCGCTACAACGAACGG
CAACGACGCCGGCCACCAGCAACCCGGCAGCGGCAGCGACGTGGTCGACA
ACATCTGCTCGCCAGCAACGAAGCCGAGAGCGGCGGCGCCGGCGGCGCCG
GCCGCGGCCTCGCCGCGCGCGGGACAAATGCGAAGGACGATTCAATCTTT
ATGGGAGAGGTCTCGCTCTCACGCGCGAGTGTGTTGCAAGGCACGTCAGG
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17631:774..2174-

>mRNA_Ecto-sp13_S_contig17631.5331.1 ID=mRNA_Ecto-sp13_S_contig17631.5331.1|Name=mRNA_Ecto-sp13_S_contig17631.5331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17631:774..2174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCATACAATGCTGACAATGGTGCCGATCATGGTGGCCGTTACCAA
CCACTACCACCACGGCGTTGCTGCGTTCAACTTAGGGCCACGAGGGGTAC
CAGTCGAAACAGGCCGATTCTCTTTGTTCGCGTCGTCGACGTCCTCCGTC
TCCTCCCGATGTGCCACCGAAGTTAGCCCTGGCGCCGGCAGCAGCGACGG
CAGCATGCCTGGCGGCCTCGTTGGCGACCACCGCTACAACGAACGGCAAC
GACGCCGGCCACCAGCAACCCGGCAGCGGCAGCGACGTGGTCGACAACAT
CTGCTCGCCAGCAACGAAGCCGAGAGCGGCGGCGCCGGCGGCGCCGGCCG
CGGCCTCGCCGCGCGCGGGACAAATGCGAAGGACGATTCAATCTTTATGG
GAGAGGTCTCGCTCTCACGCGCGAGTGTGTTGCAAGGCACGTCAGGC
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