prot_Ecto-sp13_S_contig17562.5289.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig17562.5289.1
Unique Name	prot_Ecto-sp13_S_contig17562.5289.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	54

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.330e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0

Query:    1 MDHDDFLSRPIAMDFSLSVLEGAGVSSG 28
            MDHDDFLSRPIAMDFS SVLEGAGVSSG
Sbjct:  527 MDHDDFLSRPIAMDFSRSVLEGAGVSSG 554

[Close]

BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.040e-8
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query:    1 MDHDDFLSRPIAMDFSLSVLEGAGVSSG 28
            MDHDDFLSRPIAMD SLS LEGAGVSSG
Sbjct:  191 MDHDDFLSRPIAMDISLSALEGAGVSSG 218

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K201_9PHAE	4.330e-8	96.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7B4_9PHAE	9.040e-8	92.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 36..53
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 54..54

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17562	contig	Ecto-sp13_S_contig17562:3081..3258 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17562.5289.1	mRNA_Ecto-sp13_S_contig17562.5289.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig17562 3081..3258 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig17562.5289.1 ID=prot_Ecto-sp13_S_contig17562.5289.1|Name=mRNA_Ecto-sp13_S_contig17562.5289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MDHDDFLSRPIAMDFSLSVLEGAGVSSGISKTEGEGWPWVGPAFVFSYCT
LIFR