mRNA_Ecto-sp13_S_contig17562.5289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17562.5289.1
Unique NamemRNA_Ecto-sp13_S_contig17562.5289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.330e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 MDHDDFLSRPIAMDFSLSVLEGAGVSSG 84
            MDHDDFLSRPIAMDFS SVLEGAGVSSG
Sbjct:  527 MDHDDFLSRPIAMDFSRSVLEGAGVSSG 554
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BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.040e-8
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 MDHDDFLSRPIAMDFSLSVLEGAGVSSG 84
            MDHDDFLSRPIAMD SLS LEGAGVSSG
Sbjct:  191 MDHDDFLSRPIAMDISLSALEGAGVSSG 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17562.5289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE4.330e-896.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7B4_9PHAE9.040e-892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17562contigEcto-sp13_S_contig17562:3081..3258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462913.3725538-CDS-Ecto-sp13_S_contig17562:3080..31571681462913.3725538-CDS-Ecto-sp13_S_contig17562:3080..3157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17562 3081..3157 -
1681462913.381256-CDS-Ecto-sp13_S_contig17562:3173..32581681462913.381256-CDS-Ecto-sp13_S_contig17562:3173..3258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17562 3174..3258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17562.5289.1prot_Ecto-sp13_S_contig17562.5289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17562 3081..3258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17562.5289.1

>prot_Ecto-sp13_S_contig17562.5289.1 ID=prot_Ecto-sp13_S_contig17562.5289.1|Name=mRNA_Ecto-sp13_S_contig17562.5289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MDHDDFLSRPIAMDFSLSVLEGAGVSSGISKTEGEGWPWVGPAFVFSYCT
LIFR
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mRNA from alignment at Ecto-sp13_S_contig17562:3081..3258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17562.5289.1 ID=mRNA_Ecto-sp13_S_contig17562.5289.1|Name=mRNA_Ecto-sp13_S_contig17562.5289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=178bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17562:3081..3258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCACGACGATTTCCTTTCCCGACCGATTGCAATGGATTTCTCGCT
GTCGGTTTTAGAGGGGGCGGGTGTGTCTAGCGGGAGTGGTTCTTGATCAA
GTTTCCAAGACAGAAGGTGAAGGTTGGCCTTGGGTGGGGCCGGCTTTCGT
TTTCTCATACTGTACCTTAATTTTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17562:3081..3258-

>mRNA_Ecto-sp13_S_contig17562.5289.1 ID=mRNA_Ecto-sp13_S_contig17562.5289.1|Name=mRNA_Ecto-sp13_S_contig17562.5289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17562:3081..3258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCACGACGATTTCCTTTCCCGACCGATTGCAATGGATTTCTCGCT
GTCGGTTTTAGAGGGGGCGGGTGTGTCTAGCGGGATTTCCAAGACAGAAG
GTGAAGGTTGGCCTTGGGTGGGGCCGGCTTTCGTTTTCTCATACTGTACC
TTAATTTTCAGG
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