mRNA_Ecto-sp13_S_contig17526.5272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17526.5272.1
Unique NamemRNA_Ecto-sp13_S_contig17526.5272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: D8LKI6_ECTSI (ABC transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI6_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 3.360e-100
Identity = 191/230 (83.04%), Postives = 199/230 (86.52%), Query Frame = 1 
Query:    1 FVQDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPSLLAGKASSAGGAAVSVSGGGGKNSGLSDGGVL-AAGGVVNTGEVVENHNVSPDG----TVEGSKARGVVGMLRRXXXXXXXXXXXXXXXXXXXXXXXXXXVSAEHDAASVLKTPGVTGRVAAPMPLRAGK 675
            FVQDNVP+CLWWLKDASMIKQAFEALCVNELKGLEFECDNKSR PCIRTGEQMLERVAFGESTVEGAT+GL+KILGSCWALTY ALVLGKPRFQTMLDPSLLAGK+S               NSGL DGG+L A+G VVNTGEVVENH+ SPDG    TV+GSKARGVVGMLR XXXXXXXXXXXXXXXXXXXXXX    VSAEHDAASVLKT GVTGRVAAPMPLRAGK
Sbjct:    8 FVQDNVPQCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRAPCIRTGEQMLERVAFGESTVEGATIGLSKILGSCWALTYLALVLGKPRFQTMLDPSLLAGKSSXXXXXXXXXXXXXXXNSGLLDGGLLLASGDVVNTGEVVENHDGSPDGGRSSTVKGSKARGVVGMLRXXXXXXXXXXXXXXXXXXXXXXXA---VSAEHDAASVLKTSGVTGRVAAPMPLRAGK 234
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A836CJY0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJY0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.280e-24
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKS--RGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPSLLA 309
            QDNVP+ L  LK+AS+IK AFE + VNE+   +F C + S  RGPCI+TGEQML+R+ FG+STV  +   L KIL + + LTYF LV  +P++Q MLDP  +A
Sbjct:  508 QDNVPRLLRPLKEASLIKWAFEGMSVNEMNDTKFLCHDASFKRGPCIQTGEQMLDRIGFGKSTVRNSVQALAKILLASYTLTYFGLVASRPKYQPMLDPDEVA 610
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A836CL29_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL29_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.830e-24
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKS--RGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPSLLA 309
            QDNVP+ L  LK+AS+IK AFE + VNE+   +F C + S  RGPCI+TGEQML+R+ FG+STV  +   L KIL + + LTY  LV  +P++Q MLDP  +A
Sbjct:  320 QDNVPRLLRPLKEASLIKWAFEGMSVNEMNDTKFLCHDASFKRGPCIQTGEQMLDRIGFGDSTVRNSVQALAKILLASYTLTYLGLVASRPKYQPMLDPDEVA 422
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A4D9D0J8_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0J8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.520e-17
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNK--SRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDP 297
            + +VP  L W++D S+IK AFEALC+NE +GLEFE + +     P +  GEQ+L+R+ F ESTV  A V  + + G  + LTY  L L KP+FQ +L P
Sbjct:  597 EKSVPVALRWIQDVSLIKYAFEALCINEFQGLEFEQEKRLGPGPPQVAKGEQVLQRLNFHESTVTRAVVRQSALAGVSYLLTYLMLALKKPKFQRVLSP 695
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A7S2S291_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S291_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.980e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPS 300
            +D+ PK L WL   S+++  FEAL VNE   LEF C + +RGPC++TGE+ L RVA   ++V GA +   +IL   +  TY AL   +P F  M  P+
Sbjct:  122 EDSTPKYLRWLPKMSLVRWGFEALSVNEFTDLEFTCKD-ARGPCLKTGEEALGRVALERASVRGAVMAQARILAGSYIGTYAALRASRPSFAKMHPPT 218
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: R7QTJ3_CHOCR (Uncharacterized protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTJ3_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 9.790e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   10 DNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPSLL 306
            +NVP    W+   S+IK A+EALCVNE +G+EFE         +RTGEQ+L+R+ +GESTV  A + L+KIL   +  TY  L L KP+F+  L P L+
Sbjct:  437 ENVPAWASWIPRVSLIKHAYEALCVNEFRGIEFEAKESWD---VRTGEQVLQRMTWGESTVSKACLRLSKILAFNYLATYAILTLKKPKFEK-LQPVLV 531
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A6T0FSZ2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6T0FSZ2_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 1.360e-15
Identity = 41/97 (42.27%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDP 297
            +++ P+ L W+   S I+   E L VNE  GL F C   +RGPC  TGEQ LERV+FG STV GA V   K++G  +  T   L    P+F  +  P
Sbjct:  196 EESTPRALRWIPKVSFIRWCSEGLAVNEFSGLRFSCKG-ARGPCCETGEQALERVSFGGSTVRGAAVAQAKLVGGLYVATLLVLRRSSPKFLRVEPP 291
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: A0A7S2S2A1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2A1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.590e-15
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPS 300
            +D+ PK L WL   S+++  FEAL VNE   LEF C + +RGPC++TGE+ L RVA   ++V GA +   +IL   +  TY AL   +P F  M  P+
Sbjct:  581 EDSTPKYLRWLPKMSLVRWGFEALSVNEFTDLEFTCKD-ARGPCLKTGEEALGRVALERASVRGAVMAQARILAGSYIGTYAALRASRPSFAKMHPPT 677
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: E1Z6R9_CHLVA (ABC transporter domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6R9_CHLVA)

HSP 1 Score: 84.0 bits (206), Expect = 4.910e-15
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDP 297
            + NVP  L WL  AS+IKQAFE  CVNE +G EFE D +  G    TG+++LER++FG+S++        +I+ + + LTY  LV  +P++Q ++ P
Sbjct:  612 ESNVPGPLKWLPSASLIKQAFEGSCVNEFRGAEFELDERGHGTA--TGDEVLERLSFGDSSLRRTLASQGRIMLTYYWLTYCILVRKQPKYQPLMMP 706
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BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Match: R1BTT3_EMIHU (ABC transporter domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BTT3_EMIHU)

HSP 1 Score: 83.6 bits (205), Expect = 6.150e-15
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    7 QDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTGEQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRF 279
            +++ P+ L W+   S I+   E L VNE  GL F C   +RGPC  TGEQ LERV+FG STV GA V   K++G  +  T   L    P+F
Sbjct:  465 EESTPRALRWIPKVSFIRWCSEGLAVNEFSGLRFSCKG-ARGPCCETGEQALERVSFGGSTVRGAAVAQAKLVGGLYVATLLVLRRSSPKF 554
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17526.5272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKI6_ECTSI3.360e-10083.04ABC transporter n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A836CJY0_9STRA2.280e-2453.40P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CL29_9STRA4.830e-2452.43ABC-2 type transporter-domain-containing protein n... [more]
A0A4D9D0J8_9STRA1.520e-1746.46ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S2S291_9STRA2.980e-1642.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
R7QTJ3_CHOCR9.790e-1646.46Uncharacterized protein (Fragment) n=1 Tax=Chondru... [more]
A0A6T0FSZ2_EMIHU1.360e-1542.27Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2S2A1_9STRA3.590e-1542.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
E1Z6R9_CHLVA4.910e-1542.27ABC transporter domain-containing protein n=1 Tax=... [more]
R1BTT3_EMIHU6.150e-1543.96ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17526contigEcto-sp13_S_contig17526:251..2150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score301.6
Seed ortholog evalue3.1e-79
Seed eggNOG ortholog2880.D8LKI6
Model size681
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
Ec32 ortholog descriptionABC transporter
Ec32 orthologEc-16_003100.1
Cds size681
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.192737-CDS-Ecto-sp13_S_contig17526:250..3781681462912.192737-CDS-Ecto-sp13_S_contig17526:250..378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17526 251..378 +
1681462912.2030618-CDS-Ecto-sp13_S_contig17526:990..10441681462912.2030618-CDS-Ecto-sp13_S_contig17526:990..1044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17526 991..1044 +
1681462912.2120852-CDS-Ecto-sp13_S_contig17526:1651..21501681462912.2120852-CDS-Ecto-sp13_S_contig17526:1651..2150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17526 1652..2150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17526.5272.1prot_Ecto-sp13_S_contig17526.5272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17526 251..2150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17526.5272.1

>prot_Ecto-sp13_S_contig17526.5272.1 ID=prot_Ecto-sp13_S_contig17526.5272.1|Name=mRNA_Ecto-sp13_S_contig17526.5272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
FVQDNVPKCLWWLKDASMIKQAFEALCVNELKGLEFECDNKSRGPCIRTG
EQMLERVAFGESTVEGATVGLTKILGSCWALTYFALVLGKPRFQTMLDPS
LLAGKASSAGGAAVSVSGGGGKNSGLSDGGVLAAGGVVNTGEVVENHNVS
PDGTVEGSKARGVVGMLRRRAEHRRRRRHRRRRRRRGAVTSAAAAVSAEH
DAASVLKTPGVTGRVAAPMPLRAGKY*
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mRNA from alignment at Ecto-sp13_S_contig17526:251..2150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17526.5272.1 ID=mRNA_Ecto-sp13_S_contig17526.5272.1|Name=mRNA_Ecto-sp13_S_contig17526.5272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17526:251..2150+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTGCAGGATAACGTCCCAAAATGTCTTTGGTGGCTGAAAGACGCGTC
CATGATCAAGCAAGCTTTCGAAGCCTTGTGCGTCAACGAGCTGAAAGGCT
TGGAGTTCGAGTGCGACAACAAATCGAGGTTTGTACGGCTTTTCGGCGCA
ATACACGGAGGCCGGGGGGCGGAGTTTTCAGGTTGCTGTATCTGTAGTGA
CCATAACGTGTCCTGTTGAATCTTTAGTTGGCGAGTCCTTCTGCAGCGAT
CGGGGGGAAGTGCCTCCGCCATTTTATTTTTTTGGTGCAAATGTGGTGCG
TGCAATACGTATCTGTGAAGGTTTTGGAGCCTGTGTTCGAGACGGGGGTT
GAGGGCCACGCTCTTTGCTCGTTCTCCCTTTCCAGGGCTGTAGCAAGCGC
TACCTCTGTTCGCTAACACCGCTCAAATTGGAAGTGATAATTTCTTGGAA
TTAGAGGCTCGTGCCTTCATTATTGGGTTGTTGGCTGGACTTGTTTTTTA
GAGAACGCCCCGAGTGTGAAAAGGTCTCAAGATATCGCATTTGCCTCCGA
GCACACACTGTGATGGCCCCGAGATGGATACTCCAAACATGCACACAGAA
CCATGTGTTGACGGCGGAGTAGATGAGACGAATACTCACACTTACAATTT
CCAAGGCCTTGACAGGGGGTTCTAAGCTCCCCCCCTCCAGCCTGCACGAC
ATCACCCCCTTTTCCTGTACCGTTTTCATGGATGCAACAGGGGACCTTGC
ATCAGGACTGGAGAGCAGATGCTGGAACGGGTGGCTTTCGGAGAGTGAGT
TGTTTATTGGAGAACTATCTGCACACCCTTTGTGTCTTCCCTCTATAGTC
ACGATTTATGCCTGGGCGATTTACTCCAAAAGGGCGAGGGCTTATTTTTT
AAGGTTCTCTCGTCGGGTTCATGTTCTGGAAGCATGTTGGGGAAGATTGA
GATATTCGACCGCCCTCATCCTAATTTTGAGTTGCTAGTCGTGTTGGAAT
ACTCCATCCAACTCGAGCGTGGAATGAATTTGTCGTACATTGTCCTGTTC
AGGGTGTAGTCTAAGCCAGTCGCTTATGCCCGTCCAAAGGCGGGACCGAA
AGTACGCTGTCTGCCGTTTGCCCATCCCAATTGGATGTCCGTGTTCCAAA
GTTGGGGTTTTTTATTTTAACCAAAACTCTCACCCGTTCGCAACGCGTAT
CCACCACCCCCTTCTAGATAGGCTAGGGAAAGACGTAATCGAGCCACCTT
TGACAAAGTAGGAAGGAACGATTGGCCATCGGTGATGGGTCCCGAGGGAA
GAATGCTCCGTCCTCTCTCGAGGATGCAAGGTCAATGGTCAAACAGCTAA
GGCATGCGATACATGAGAGTACGCTCCCCCCCCCCCCCCCCTTTCGTGCA
GGAGCACGGTCGAGGGCGCCACCGTAGGCCTGACCAAAATCCTCGGGTCC
TGCTGGGCCCTCACGTACTTCGCCCTCGTCCTCGGCAAGCCCAGGTTCCA
GACAATGCTCGACCCTTCCCTCCTCGCGGGCAAGGCTTCTTCCGCCGGCG
GTGCCGCCGTCTCTGTCTCCGGCGGCGGCGGTAAAAACAGCGGGCTTTCG
GACGGCGGCGTCCTCGCCGCCGGGGGAGTGGTGAACACGGGAGAAGTCGT
CGAGAACCACAACGTCTCGCCTGACGGCACCGTTGAGGGCAGCAAGGCGC
GGGGCGTCGTCGGCATGCTACGCCGACGGGCGGAACACCGCCGTCGACGC
CGCCACCGCCGCCGCCGCCGCCGCCGCGGGGCGGTGACGTCGGCGGCGGC
GGCGGTCTCCGCCGAGCATGATGCCGCGAGCGTGCTTAAAACCCCCGGAG
TTACCGGGAGGGTGGCGGCGCCGATGCCGCTTCGCGCCGGCAAGTACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17526:251..2150+

>mRNA_Ecto-sp13_S_contig17526.5272.1 ID=mRNA_Ecto-sp13_S_contig17526.5272.1|Name=mRNA_Ecto-sp13_S_contig17526.5272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17526:251..2150+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGTGCAGGATAACGTCCCAAAATGTCTTTGGTGGCTGAAAGACGCGTC
CATGATCAAGCAAGCTTTCGAAGCCTTGTGCGTCAACGAGCTGAAAGGCT
TGGAGTTCGAGTGCGACAACAAATCGAGGGGACCTTGCATCAGGACTGGA
GAGCAGATGCTGGAACGGGTGGCTTTCGGAGAGAGCACGGTCGAGGGCGC
CACCGTAGGCCTGACCAAAATCCTCGGGTCCTGCTGGGCCCTCACGTACT
TCGCCCTCGTCCTCGGCAAGCCCAGGTTCCAGACAATGCTCGACCCTTCC
CTCCTCGCGGGCAAGGCTTCTTCCGCCGGCGGTGCCGCCGTCTCTGTCTC
CGGCGGCGGCGGTAAAAACAGCGGGCTTTCGGACGGCGGCGTCCTCGCCG
CCGGGGGAGTGGTGAACACGGGAGAAGTCGTCGAGAACCACAACGTCTCG
CCTGACGGCACCGTTGAGGGCAGCAAGGCGCGGGGCGTCGTCGGCATGCT
ACGCCGACGGGCGGAACACCGCCGTCGACGCCGCCACCGCCGCCGCCGCC
GCCGCCGCGGGGCGGTGACGTCGGCGGCGGCGGCGGTCTCCGCCGAGCAT
GATGCCGCGAGCGTGCTTAAAACCCCCGGAGTTACCGGGAGGGTGGCGGC
GCCGATGCCGCTTCGCGCCGGCAAGTACTAA
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