prot_Ecto-sp13_S_contig17272.5142.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17272.5142.1
Unique Nameprot_Ecto-sp13_S_contig17272.5142.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length183
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17272.5142.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 4.160e-109
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0 
Query:    1 MTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMNLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQARTVRAFSEELTLVALERWKRDATAVAGSIFGLARLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY 183
            +TSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSM+LRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQ   VRAFSEEL LVALERWKRDA AVAGSIFGL RLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY
Sbjct:   98 VTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQ---VRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17272.5142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W7_ECTSI4.160e-10995.63Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 81..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 183..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..182
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 150..160
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 161..182
NoneNo IPR availableTMHMMTMhelixcoord: 134..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17272contigEcto-sp13_S_contig17272:982..3490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17272.5142.1mRNA_Ecto-sp13_S_contig17272.5142.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17272 982..3508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17272.5142.1 ID=prot_Ecto-sp13_S_contig17272.5142.1|Name=mRNA_Ecto-sp13_S_contig17272.5142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRD
GRHRLSMNLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPT
LSYNNASEQARTVRAFSEELTLVALERWKRDATAVAGSIFGLARLFIMLR
FHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY
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