mRNA_Ecto-sp13_S_contig17272.5142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17272.5142.1
Unique NamemRNA_Ecto-sp13_S_contig17272.5142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17272.5142.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 3.650e-112
Identity = 179/189 (94.71%), Postives = 182/189 (96.30%), Query Frame = 1 
Query:    1 GGEVTIMTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMNLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQARTVRAFSEELTLVALERWKRDATAVAGSIFGLARLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY 567
            GGEV ++TSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSM+LRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQ   VRAFSEEL LVALERWKRDA AVAGSIFGL RLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY
Sbjct:   92 GGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQ---VRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17272.5142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W7_ECTSI3.650e-11294.71Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17272contigEcto-sp13_S_contig17272:982..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categorysignal anchor
Exons4
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.5565147-CDS-Ecto-sp13_S_contig17272:981..11941681462902.5565147-CDS-Ecto-sp13_S_contig17272:981..1194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17272 982..1194 -
1681462902.567197-CDS-Ecto-sp13_S_contig17272:1477..16151681462902.567197-CDS-Ecto-sp13_S_contig17272:1477..1615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17272 1478..1615 -
1681462902.5771697-CDS-Ecto-sp13_S_contig17272:2588..26741681462902.5771697-CDS-Ecto-sp13_S_contig17272:2588..2674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17272 2589..2674 -
1681462902.5868053-CDS-Ecto-sp13_S_contig17272:3378..34901681462902.5868053-CDS-Ecto-sp13_S_contig17272:3378..3490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17272 3379..3490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.5967312-UTR-Ecto-sp13_S_contig17272:3490..35081681462902.5967312-UTR-Ecto-sp13_S_contig17272:3490..3508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17272 3491..3508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17272.5142.1prot_Ecto-sp13_S_contig17272.5142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17272 982..3490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17272.5142.1

>prot_Ecto-sp13_S_contig17272.5142.1 ID=prot_Ecto-sp13_S_contig17272.5142.1|Name=mRNA_Ecto-sp13_S_contig17272.5142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRD
GRHRLSMNLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPT
LSYNNASEQARTVRAFSEELTLVALERWKRDATAVAGSIFGLARLFIMLR
FHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVY
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mRNA from alignment at Ecto-sp13_S_contig17272:982..3508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17272.5142.1 ID=mRNA_Ecto-sp13_S_contig17272.5142.1|Name=mRNA_Ecto-sp13_S_contig17272.5142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17272:982..3508- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGAGGTGACGATCATGACCTCCGTAGAGGTGTTTTCGATGCCGTT
CTTCTTCGGCTCTAGCCCCGCCATCGTCGGGCGTGCCATAGCCATGTTCG
CCTTCGGCCTAATGCTGGTCATCTACATTGGTGAGAGAGAGCAGCAGATG
GGATCGTTTGCTACGGAGACTGGACCCGTGTGTGTGTGCATTATTATTAT
TTGCATCGACCGCGCTAACCGGCTGACCGATTCTGCGTGTGTTTCTTCTC
TTCCCTTGCCATCCTTGGGATTCCGTACTCTTCGTGTGGTACTCGTGTTG
TCGCCGCTGTTGTTGCTCTTGTTGTCGCCGCTGTTGTTGCTACTGTGGCC
TCCATGCCTGAACCACCTCTCTGTGCCAGACCCACTATCGCCTAAGCCTG
ACCCAGTCATCACGTGCCCACACAGTTTGAATAGTTGTGTCTGTAGGGCG
TGCCGGTGTGTACAGCGGTATGGTGTCCAGACTGTGATGCATCTTGTTTG
CCGCCATGGGTACGATATGAGAGGTCAGACGAACGTGTTTGAGAGAGCCA
CGGTGCGAGCGGCTCGCTGTACAAGAGCGTGAGAGGATTTGCTTTGTTCG
GCGCAATGCGCGGGTAGGTGTGGGTATAACGAGGACTGAGCGAGGGCTGA
GCGAGGAGACGGTTGCTCTTACATGTAGAACACTGAACGCACGAGTGCCT
CGCGGTAACCGCAGCGGAGATTCCCGTAACGCCTTGCTCGGCTCGGTACG
GTACGGTCACGGTACGGTAATAACCGTTTTCGATGTCACCATAAATTCGT
TTTCGATGCTACCGTGGGACCCCGGTCGTGTTAGGCAAGGACGTGCTCCG
TGCTTGGAGAGAGGTCAGGGACGGGCGCCATCGGCTGTCGATGAACCTGA
GGCACGTACCTGTCACGACGGTGAGAATTGAACAGACGTCTGTCTTGCCG
GTGCTGGTGCGGGTGCTGGTGACGGTGCTGGCGTTGGTGACGCTTCCTTG
TGGTGGGTTTTGATTGTTGATGCCGTTGCTGCTGGCGGTGTAATTCGTTG
TTGTTGTGTTGTTGTTGTTGCTGCTGCTGCTGCCTCTGTTGTTGCTGTTG
TTGCTGTTGCTACTGCTGCTGGGCGTATTTGTTGTGGAACGCGACCATCT
CGCCAAGCAACCCTCTGTGCTTGTTCTGTTCTGCCCTGTTTGCCTACTCA
CCGGATCTGGCAGAAAATCTTTCGGGCCGAATTAAGTCCTCTTCGATTGC
CTTACTATGCTTGGGTACCATGCGCACGCCAGTTTTGCTCCGAAACTTAC
TCAGTTTTAGCTACATCTAGCGCTGAGTCTCGTAGACTCTCCGGCGTGCC
CGTGGGTTGATTGAGAAGCCAAGTTAATATACTCCACGAGTACTGTTGTG
CGATGATCATCCACCGTGTTTATCGGCGATGAGAGTGGGCACCAAACTTG
CAGGATTACTTTTGCGCTGATCAGCAGCCACTGCTGTGTTTCTCGACGAT
GAAAGTAAACAGCAATTTACAGGAGCACCTTTGCGCTGATCAGTAACTGC
TGTGTGTCTTGTTCATGAAGATTTCTTCCTCCGAGTAAACAGCAATTTAC
ATGAGCACTTTGGCACACATGGCCCCGTGTTTTTCTCCGTGACGATAAAT
CCCGACGAGTAGACAGCAACTCACAACCGCGCTCTTGCGCTCATGACCCA
GTGTTGTTCTCGGCCATGACAAATTAATTGTCTTTTCCAAGAGCGAAACA
ACAACCAAGGTCCCTTCCACATTTTAGCGGTTCACCCTCGTGACCTCCTG
TCCTTTATTGTCGACGGTTTCGCCCATGTCGCTTTTCACTTTTGGTTTTA
TTATTTTTGATCGTTTTCGTGGACCATGCCTGTACGCACCCAGGCTACCG
CACTGAACCTCGTCGGAGACTGCGTGTTCCTGTGGAACCTGGTGCTGTGG
GTGAACGTGGCCGTGACGGCCGCGAAGTTCGAGCTGATCCCGACGCTGTC
CTACAACAACGCCTCCGAACAGGCGAGAACCGTCAAAAAGACGGCTCTAC
AGCTGATACAGGGATAGACGTCGACTACCGCCGCCCCGCGTGTGAAGGAA
GGGAGGGCGGCAGAGACGTCTACGTGTGAAGTGAAGGGTTGATGGTTGGG
CCGATTTTGATGCGGAAGGGACCATGACGCCGAAAACAGCAACATCGTCA
ACACCGCAGACAACATGAGCAGCAGCAACAACAACAGCGATTGTTACCGT
CGATGTGTAGATGACACCGACACCTCAGAAAATCACCTCAGTTGACCCCC
TGCTGCGCCAACAGGTCCGAGCGTTCAGCGAAGAACTGACACTGGTCGCC
CTAGAACGTTGGAAGCGGGACGCGACCGCAGTGGCCGGGAGCATCTTCGG
CCTAGCGAGGCTGTTCATCATGCTCCGGTTCCACCCGCGCTTGTCCCTGG
TGACCGACGTCCTTACCGCTTCGGCTGTACACTTGGTACACTTCTTCATC
ATGTTCTTCATGGTGGTGGGAGTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17272:982..3508-

>mRNA_Ecto-sp13_S_contig17272.5142.1 ID=mRNA_Ecto-sp13_S_contig17272.5142.1|Name=mRNA_Ecto-sp13_S_contig17272.5142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17272:982..3508- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTCCGTAGAGGTGTTTTCGATGCCGTTCTTCTTCGGCTCTAGCCC
CGCCATCGTCGGGCGTGCCATAGCCATGTTCGCCTTCGGCCTAATGCTGG
TCATCTACATTGGCAAGGACGTGCTCCGTGCTTGGAGAGAGGTCAGGGAC
GGGCGCCATCGGCTGTCGATGAACCTGAGGCACGTACCTGTCACGACGGC
TACCGCACTGAACCTCGTCGGAGACTGCGTGTTCCTGTGGAACCTGGTGC
TGTGGGTGAACGTGGCCGTGACGGCCGCGAAGTTCGAGCTGATCCCGACG
CTGTCCTACAACAACGCCTCCGAACAGGCGAGAACCGTCCGAGCGTTCAG
CGAAGAACTGACACTGGTCGCCCTAGAACGTTGGAAGCGGGACGCGACCG
CAGTGGCCGGGAGCATCTTCGGCCTAGCGAGGCTGTTCATCATGCTCCGG
TTCCACCCGCGCTTGTCCCTGGTGACCGACGTCCTTACCGCTTCGGCTGT
ACACTTGGTACACTTCTTCATCATGTTCTTCATGGTGGTGGGAGTTTAC
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