mRNA_Ecto-sp13_S_contig17254.5125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17254.5125.1
Unique NamemRNA_Ecto-sp13_S_contig17254.5125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.610e-16
Identity = 48/89 (53.93%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
            MA TDRE LV +F  T GT W  N NWNTTAEL TWYGIKVD  GRV EL L               P +   GSIPKEL  L N++SL
Sbjct:    1 MAATDREVLVAIFLLTDGTGWERNDNWNTTAELSTWYGIKVDGQGRVVELSL---------------PKNNLRGSIPKELGTLTNLKSL 74          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-13
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSLDL 273
            MA+ DR+ALV LF STGG  W    NWNT A+  TW+G+KV+  GRV ++ L S               +   G IPKEL ALA + SL L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGS---------------NNLQGPIPKELGALAKLASLCL 76          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.080e-12
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
            M +TDREALV+LF STGG  W    NW+T A+L TW G+ V++ GRV  L L                 +   GSIP EL  LA +R+L
Sbjct:    1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQY---------------NNLQGSIPPELGKLAALRAL 74          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
            MA+TDREALV LF STGG  W   GNW+T A + TW+G++V+  GRV  L L                 +   G IP EL AL+ ++ L
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGG---------------NSLRGHIPPELGALSELQEL 74          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-11
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRL 156
            MA+TDREAL+TLF S GG  W+   NW T+  L TWYG++V+  GRV +LR+
Sbjct:    1 MASTDREALITLFRSAGGARWFRRNNWLTSDGLATWYGVEVNDQGRVVKLRV 52          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 9.520e-11
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIR 261
            MA+ DR+ALV LFH+TGG NW    NW T+A+L TW G+KV+ +GRV EL L+                +   G+IP EL  L  +R
Sbjct:  187 MASPDRDALVALFHATGGDNWTRKSNWCTSAKLGTWKGVKVNEEGRVVELDLSD---------------NNLRGTIPVELGKLGALR 258          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLA 159
            M + DR ALV LF STGGT W  N  W+T A+L  WYG+ V+ DGRV+ELRL+
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.080e-10
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRS 264
            MA+ DR+ALV LFH+TGG NW    NW T A L TW G++V+  GRV EL L+                +   G+IP EL  L  +R+
Sbjct:  189 MASPDRDALVALFHATGGDNWTRKSNWCTAARLGTWEGVQVNQQGRVVELDLSD---------------NNLRGAIPGELGKLGALRN 261          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.850e-9
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSLDL 273
            MA+TDR+ALV LF S GG  W    NW+T A+L +W+G+ ++  GRV EL+LA                +   G IP+++ AL  I  L L
Sbjct:    1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKLAV---------------NNLQGVIPEKIGALNKIEILTL 76          
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.130e-9
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRL 156
            M++TDREAL+ LF STGG  W    NW+T A L TW+G+KV+  GRV  L L
Sbjct:    1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSL 52          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL98_ECTSI1.610e-1653.93LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KQQ0_9PHAE2.220e-1345.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQP2_9PHAE8.080e-1243.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI1.090e-1142.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KCH6_9PHAE1.440e-1155.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI9.520e-1143.68Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA4_ECTSI3.800e-1058.49Hypothetical leucine rich repeat protein (Partial)... [more]
A0A6H5JBQ0_9PHAE6.080e-1042.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI3.850e-939.56LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FXI0_ECTSI6.130e-955.77Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17254contigEcto-sp13_S_contig17254:712..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score87.0
Seed ortholog evalue7.9e-15
Seed eggNOG ortholog2880.D7FL98
Model size447
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons4
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size447
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462901.2762785-CDS-Ecto-sp13_S_contig17254:711..8671681462901.2762785-CDS-Ecto-sp13_S_contig17254:711..867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17254 712..867 +
1681462901.2873356-CDS-Ecto-sp13_S_contig17254:3002..31421681462901.2873356-CDS-Ecto-sp13_S_contig17254:3002..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17254 3003..3142 +
1681462901.2981107-CDS-Ecto-sp13_S_contig17254:3304..33751681462901.2981107-CDS-Ecto-sp13_S_contig17254:3304..3375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17254 3305..3375 +
1681462901.312309-CDS-Ecto-sp13_S_contig17254:3637..37171681462901.312309-CDS-Ecto-sp13_S_contig17254:3637..3717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17254 3638..3717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17254.5125.1prot_Ecto-sp13_S_contig17254.5125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17254 712..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17254.5125.1

>prot_Ecto-sp13_S_contig17254.5125.1 ID=prot_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEEL
RLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSLDLVDHELTGIA
LEECGPGCYWTEVNVVYSFLTASSIPKELGTLTKMLRLNLTRNKLAGKR
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mRNA from alignment at Ecto-sp13_S_contig17254:712..3717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17254.5125.1 ID=mRNA_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3006bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17254:712..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCACGGATCGTGAGGCGCTGGTGACCCTCTTTCATTCCACGGG CGGGACTAATTGGTACTGTAACGGCAACTGGAACACGACGGCCGAGCTTT TCACGTGGTACGGGATCAAAGTCGACCTCGACGGTCGCGTCGAGGAGCTA AGACTTGTTGGGCACAACCTCCGAGGTATGTCTGGCCTACTCGTTGTACA AGCCCTGCTCTCTTTCGATCGGCTTGGCCTTCCCCTACAATTTATCAAAT TGAAGCCCTCTCGACCTACACACCCCTTTCACCAACTGCACGTTCAAGAA AAGCCACGTCCCCCGTCGTTGTTGATTCGGGCGTTCTGAACGGGATCCAC TCATCGATGTTGATTCGAGAATTATCTCCGCAATGGCTTCCTGGTATTCA TCGTACGCCACCGCGTCAAGTTACTCGATACGAGTGTGAAGTGCTCTTTA CGCCCATCGACGTAGTGTTGCTGATTTTTTTGACGTGTACCAGGTGGCCG ACAAGTGGTTTTGTAGTGGCTGGATGAATGTTGATTTTGTCTTTCCAGCA ACACCTGGGGGAATGCTGCCCCTCTGAGAATCAGTGGGTTCGTCTCCTAT CATCCTGCAGCTCGGCGAGGTCTGGCTACGTCTCTCTCTCTCTCTCTCTC TCTCTCTCTAATACCTCACTGTCTGCCTGCCTGTCCGTCTGCCTCCCTCT CTCTCTAGTGCAGTGGAAGCCCCCACAAAGCACCCTCTCGCCTTCTCTCT CTCTTTCTCAGCCAACACACACTGAGTCGAAACTTCTCTCCGCACACACA CCTTGCTCTCAGCTCGCCGGCGCAGCTTGGAGATCTCTCCTACACTGTGT TCCACACCGAGTACCGTAGGTTGCATAAGGCGTGACACCCGCTAGATCCA TTTCCAACGCTCGATTACTACACAGCAGAGGAAGTGGTGGAACCGGAAAC GGCGGCATTGGAAATGTCTCGTCGAAAGCTTGCCCAAAATGTATTGCTTT CTTTCGACATCCTCGTCGTCGTGGAACCACAGTGGCTTGAAATTAGGTCC AGGGGATGCGGCATCTTCTGCAACTTACGGTAGTACAGTGTTTCCGAACG AATTGGTTCACAGTCTACGTCCCTCTCTGCCCAATTTTCCAAGCCGTTGC CGGCGCTCGCCAGTCCACCCACAAGAAACGCAGCCAACCTCCACGGTAAG AAGTGAGCGCTCATCCAGTTCGTGACTCTATGCTCGCTTTTGAGTGCCCG TGACGTAATTTCTTGCTGCTGCGCCCTACCTGGTATCGTGTATATACCCG CACGCCGCAGTCCGCACTCTACAGTTCGCAGTCCGCACTCCGCGCTTTAG TTCTCCTTTTTCCTGCGTGCCTTTTTTCCCGCCGTTTGGTGTAGTAGAGG TGTGGTGCCTTCGCACCCATCGCCAGGTAGAGGGAGCGCCATGTTCATAT TGAAAGCAGTCCATACGTGGCGGTGTACAGTAGGACCTGGATGTAATTGG TATTTCACATGACACGAAATGGATGCTAGAAGCCTTGGGTTTCCTTTATA TTCAACGGGTCCATCCAGCGTCTCCGAGCTACAGTCCATTCTTTACCTGC AATTCGCCGAGGTCTGGTGGCGTGCACACGAATCCAGCCTGATTCATGAC TCGAACAGAAAACAGACGAATTGGGTCTACAATAATACGCACCGTCCATG ACTTTATTGTGTCCACCTCGTTCATGATGCCCTGGGAACACCACGACTGG CACACGGAACGGACACTGACGCTGGTGTGATTCGACATCGCCTCACTAGT AGGGCACGATGTACCAGGGTGCCACTCGATACCCGCGGTTTCCCTTCCAC AATGTGGGGTGTATATAGTGTGTGCGCCCTCGAAAAAGTGGATTGTGCGT GTTTCAAGAGTACGTGCATTGTCCAATCTTTCGGCCGGGCACTCGCGTCT TTCCGACCACTCGAAATCAGCTCATAGACCGTCAACAGTGTCCCGTAGAA CCCCTCCCGGGAGGATCATGATCGATCAAACGTTTTTTCGGTCTACCCTA AGAAACAAGTGGCCCCTTTCATACCCAAATGGAATGCACGTGTGCTCGTG AATAGTCCCCTCCTCGAACTGCATGCACCTTTCATTCCAGTCTCCGCCCG ACATTTGTGTGGTTTTCCACTGTTTGTGGCGACGTGAGACAAGAAGAAAA AACATCGGAGGGGGCAAAGTCGAACGGGTGCCAATTCATACAGCTCGTGC TGGATGAACGGTCAGTTCACAGCGGGCGTGTGTGATTCAAGGCGAGTTGT GCATTTGCTGTGGTCTCTTGCATGTCGAAGCTTTACCCGTGTCATGTATT TGCAGGTTCCATCCCCAAAGAGCTGGACGCCCTCGCCAACATCAGGAGCC TCGACCTCGTCGACCACGAGCTTACAGGCATGTGACATGGAGAGGCACGG AGTGGGTGCGTCTGGCATGTTTCTCCCTTGAGAGCCAGCAAGTTGTTCAA ACGTGCACGATACCCTTCCTTTCCACAGCTTGGATGAGGTAGGATCTTAC CGATTAGGCTGGGCGACAAGCGGAGAGGTCGAGTCTCGCCGAGCGCCCTC GAGGAATGTGGGCCTGGATGTTATTGGACTGAAGTGAACGTTGTATATTC TTTCCTGACAGCAAGTGTAGCCGAGTGTAAAGATGTTGACAGTGCCTCTC GACGATAATGAATGTTCCTGAACGCATAGAGGTTTACCAGCGGCCGAGGT GTGGAACCTGAGGTGGCGCCTGTCCACGGGCCAGAAATGAGTACCCATAG CATCACCGATGTTTCGATTTTTTGCTTTGTAGCGCATCGATCTCCGTAGA AACTTGACGGGACACACGCCAGAATGAATCTGCGTGTGGGCTAACGTGAA ACTCTTGAAACAACCCTCTTTTGCAGGTTCTATTCCAAAGGAGCTGGGCA CCCTGACCAAGATGTTGAGACTAAACCTGACACGGAACAAGCTTGCAGGC AAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17254:712..3717+

>mRNA_Ecto-sp13_S_contig17254.5125.1 ID=mRNA_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17254:712..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCACGGATCGTGAGGCGCTGGTGACCCTCTTTCATTCCACGGG
CGGGACTAATTGGTACTGTAACGGCAACTGGAACACGACGGCCGAGCTTT
TCACGTGGTACGGGATCAAAGTCGACCTCGACGGTCGCGTCGAGGAGCTA
AGACTTGCGAGTTGTGCATTTGCTGTGGTCTCTTGCATGTCGAAGCTTTA
CCCGTGTCATGTATTTGCAGGTTCCATCCCCAAAGAGCTGGACGCCCTCG
CCAACATCAGGAGCCTCGACCTCGTCGACCACGAGCTTACAGGCATCGCC
CTCGAGGAATGTGGGCCTGGATGTTATTGGACTGAAGTGAACGTTGTATA
TTCTTTCCTGACAGCAAGTTCTATTCCAAAGGAGCTGGGCACCCTGACCA
AGATGTTGAGACTAAACCTGACACGGAACAAGCTTGCAGGCAAGAGG
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