mRNA_Ecto-sp13_S_contig17254.5125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.610e-16 Identity = 48/89 (53.93%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
MA TDRE LV +F T GT W N NWNTTAEL TWYGIKVD GRV EL L P + GSIPKEL L N++SL
Sbjct: 1 MAATDREVLVAIFLLTDGTGWERNDNWNTTAELSTWYGIKVDGQGRVVELSL---------------PKNNLRGSIPKELGTLTNLKSL 74
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.220e-13 Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSLDL 273
MA+ DR+ALV LF STGG W NWNT A+ TW+G+KV+ GRV ++ L S + G IPKEL ALA + SL L
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGS---------------NNLQGPIPKELGALAKLASLCL 76
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 8.080e-12 Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
M +TDREALV+LF STGG W NW+T A+L TW G+ V++ GRV L L + GSIP EL LA +R+L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQY---------------NNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11 Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSL 267
MA+TDREALV LF STGG W GNW+T A + TW+G++V+ GRV L L + G IP EL AL+ ++ L
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGG---------------NSLRGHIPPELGALSELQEL 74
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5KCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH6_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 1.440e-11 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRL 156
MA+TDREAL+TLF S GG W+ NW T+ L TWYG++V+ GRV +LR+
Sbjct: 1 MASTDREALITLFRSAGGARWFRRNNWLTSDGLATWYGVEVNDQGRVVKLRV 52
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 9.520e-11 Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIR 261
MA+ DR+ALV LFH+TGG NW NW T+A+L TW G+KV+ +GRV EL L+ + G+IP EL L +R
Sbjct: 187 MASPDRDALVALFHATGGDNWTRKSNWCTSAKLGTWKGVKVNEEGRVVELDLSD---------------NNLRGTIPVELGKLGALR 258
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 3.800e-10 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLA 159
M + DR ALV LF STGGT W N W+T A+L WYG+ V+ DGRV+ELRL+
Sbjct: 1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLS 53
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 6.080e-10 Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRS 264
MA+ DR+ALV LFH+TGG NW NW T A L TW G++V+ GRV EL L+ + G+IP EL L +R+
Sbjct: 189 MASPDRDALVALFHATGGDNWTRKSNWCTAARLGTWEGVQVNQQGRVVELDLSD---------------NNLRGAIPGELGKLGALRN 261
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 3.850e-9 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRLASCAFAVVSCMSKLYPCHVFAGSIPKELDALANIRSLDL 273
MA+TDR+ALV LF S GG W NW+T A+L +W+G+ ++ GRV EL+LA + G IP+++ AL I L L
Sbjct: 1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKLAV---------------NNLQGVIPEKIGALNKIEILTL 76
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 6.130e-9 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELRL 156
M++TDREAL+ LF STGG W NW+T A L TW+G+KV+ GRV L L
Sbjct: 1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSL 52 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17254.5125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17254.5125.1 >prot_Ecto-sp13_S_contig17254.5125.1 ID=prot_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp MATTDREALVTLFHSTGGTNWYCNGNWNTTAELFTWYGIKVDLDGRVEELback to top mRNA from alignment at Ecto-sp13_S_contig17254:712..3717+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17254.5125.1 ID=mRNA_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3006bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17254:712..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17254:712..3717+ >mRNA_Ecto-sp13_S_contig17254.5125.1 ID=mRNA_Ecto-sp13_S_contig17254.5125.1|Name=mRNA_Ecto-sp13_S_contig17254.5125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17254:712..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |