prot_Ecto-sp13_S_contig172.5098.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig172.5098.1
Unique Nameprot_Ecto-sp13_S_contig172.5098.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length466
Homology
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BLAST of mRNA_Ecto-sp13_S_contig172.5098.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 1.490e-133
Identity = 413/451 (91.57%), Postives = 422/451 (93.57%), Query Frame = 0 
Query:   12 MVGVGRAPGFASSLVRCSGAYNSWLTPKEADLRSLATVAERRRGGSRGQGDGHAGRRSVAQAKRAGRTQHRNADAPRFQPFGRSGGEGSKVAERLYEDFGINSMKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQEPRIAEQETGAISARLAWLKERLQLSDEQIRSLVHRRPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDTKVAFFCQEMGATLEDVRAVLTTSPNFLLVSIDLMLAPRVAALKDAGVEVSFPAHWNDLAFGPRGEAFDFWVRRQASR 462
            MVGVGRAPGFASSLVRC GA+N+WLTPKEA+LRSLATVAERRRGGSRG+GDGHAGR SVAQAKRAGR QHRNADAPRFQPFGR+GGEGSKVAERLYEDFGIN++KKYSPEATDERKRVLTWLEG VRMSSRAIADMVEQEPRIAEQETGAISARL                     PSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLD KVAFFCQEMGATLEDVRAVL TSPNFLL+SIDLMLAPRVA LKDAGV+VSF AHWNDLAFGPRGEAFDFWVRRQASR
Sbjct:    1 MVGVGRAPGFASSLVRCGGAHNAWLTPKEANLRSLATVAERRRGGSRGRGDGHAGRGSVAQAKRAGRPQHRNADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig172.5098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI1.490e-13391.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 329..361
e-value: 1500.0
score: 2.5
coord: 218..250
e-value: 0.23
score: 20.6
coord: 292..324
e-value: 0.43
score: 19.6
coord: 255..287
e-value: 0.39
score: 19.8
coord: 181..213
e-value: 0.0087
score: 25.3
coord: 366..397
e-value: 2.1
score: 17.4
coord: 402..433
e-value: 90.0
score: 11.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 138..282
e-value: 1.8E-17
score: 63.3
coord: 292..435
e-value: 9.3E-14
score: 51.1
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 322..436
e-value: 5.9E-12
score: 47.3
coord: 161..321
e-value: 8.6E-32
score: 112.4
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 221..433
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 128..285
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 221..433
coord: 128..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig172contigEcto-sp13_S_contig172:5030..7587 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig172.5098.1mRNA_Ecto-sp13_S_contig172.5098.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig172 4925..7854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig172.5098.1 ID=prot_Ecto-sp13_S_contig172.5098.1|Name=mRNA_Ecto-sp13_S_contig172.5098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=466bp
MFLTGNSARSVMVGVGRAPGFASSLVRCSGAYNSWLTPKEADLRSLATVA
ERRRGGSRGQGDGHAGRRSVAQAKRAGRTQHRNADAPRFQPFGRSGGEGS
KVAERLYEDFGINSMKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQ
EPRIAEQETGAISARLAWLKERLQLSDEQIRSLVHRRPSVLCRSVDDSME
PKVQWLQEKLRLNADEVATMVSSAPNVLTISIEGSMAPKLDWLSRRLMLS
NEELAAVVTTCPQVLTSSIEGALEPRLRWLHTNLQIGGSVLRERVLSYPW
LLNLSEKDKLVPTFDFLKTELLLDEAEIRKTLFRNPRMFLTPMKQTFDST
KKWLCTSVGLEEEEAVKVLTKDARLLLRSTEVLDTKVAFFCQEMGATLED
VRAVLTTSPNFLLVSIDLMLAPRVAALKDAGVEVSFPAHWNDLAFGPRGE
AFDFWVRRQASRSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf