mRNA_Ecto-sp13_S_contig172.5098.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig172.5098.1
Unique NamemRNA_Ecto-sp13_S_contig172.5098.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig172.5098.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 9.300e-132
Identity = 413/451 (91.57%), Postives = 422/451 (93.57%), Query Frame = 1 
Query:  139 MVGVGRAPGFASSLVRCSGAYNSWLTPKEADLRSLATVAERRRGGSRGQGDGHAGRRSVAQAKRAGRTQHRNADAPRFQPFGRSGGEGSKVAERLYEDFGINSMKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQEPRIAEQETGAISARLAWLKERLQLSDEQIRSLVHRRPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDTKVAFFCQEMGATLEDVRAVLTTSPNFLLVSIDLMLAPRVAALKDAGVEVSFPAHWNDLAFGPRGEAFDFWVRRQASR 1491
            MVGVGRAPGFASSLVRC GA+N+WLTPKEA+LRSLATVAERRRGGSRG+GDGHAGR SVAQAKRAGR QHRNADAPRFQPFGR+GGEGSKVAERLYEDFGIN++KKYSPEATDERKRVLTWLEG VRMSSRAIADMVEQEPRIAEQETGAISARL                     PSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLD KVAFFCQEMGATLEDVRAVL TSPNFLL+SIDLMLAPRVA LKDAGV+VSF AHWNDLAFGPRGEAFDFWVRRQASR
Sbjct:    1 MVGVGRAPGFASSLVRCGGAHNAWLTPKEANLRSLATVAERRRGGSRGRGDGHAGRGSVAQAKRAGRPQHRNADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig172.5098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI9.300e-13291.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig172contigEcto-sp13_S_contig172:4925..7854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score404.8
Seed ortholog evalue5.3e-110
Seed eggNOG ortholog2880.D7FVG4
Model size1770
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
Cds size1398
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig172.5098.1prot_Ecto-sp13_S_contig172.5098.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig172 5030..7587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.436745-UTR-Ecto-sp13_S_contig172:4924..50291681462899.436745-UTR-Ecto-sp13_S_contig172:4924..5029Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig172 4925..5029 +
1681462899.4950404-UTR-Ecto-sp13_S_contig172:7587..78541681462899.4950404-UTR-Ecto-sp13_S_contig172:7587..7854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig172 7588..7854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.4470756-CDS-Ecto-sp13_S_contig172:5029..56351681462899.4470756-CDS-Ecto-sp13_S_contig172:5029..5635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig172 5030..5635 +
1681462899.4573712-CDS-Ecto-sp13_S_contig172:5836..60191681462899.4573712-CDS-Ecto-sp13_S_contig172:5836..6019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig172 5837..6019 +
1681462899.4710124-CDS-Ecto-sp13_S_contig172:6353..67221681462899.4710124-CDS-Ecto-sp13_S_contig172:6353..6722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig172 6354..6722 +
1681462899.4813967-CDS-Ecto-sp13_S_contig172:7347..75871681462899.4813967-CDS-Ecto-sp13_S_contig172:7347..7587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig172 7348..7587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig172.5098.1

>prot_Ecto-sp13_S_contig172.5098.1 ID=prot_Ecto-sp13_S_contig172.5098.1|Name=mRNA_Ecto-sp13_S_contig172.5098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=466bp
MFLTGNSARSVMVGVGRAPGFASSLVRCSGAYNSWLTPKEADLRSLATVA
ERRRGGSRGQGDGHAGRRSVAQAKRAGRTQHRNADAPRFQPFGRSGGEGS
KVAERLYEDFGINSMKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQ
EPRIAEQETGAISARLAWLKERLQLSDEQIRSLVHRRPSVLCRSVDDSME
PKVQWLQEKLRLNADEVATMVSSAPNVLTISIEGSMAPKLDWLSRRLMLS
NEELAAVVTTCPQVLTSSIEGALEPRLRWLHTNLQIGGSVLRERVLSYPW
LLNLSEKDKLVPTFDFLKTELLLDEAEIRKTLFRNPRMFLTPMKQTFDST
KKWLCTSVGLEEEEAVKVLTKDARLLLRSTEVLDTKVAFFCQEMGATLED
VRAVLTTSPNFLLVSIDLMLAPRVAALKDAGVEVSFPAHWNDLAFGPRGE
AFDFWVRRQASRSRR*
back to top

mRNA from alignment at Ecto-sp13_S_contig172:4925..7854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig172.5098.1 ID=mRNA_Ecto-sp13_S_contig172.5098.1|Name=mRNA_Ecto-sp13_S_contig172.5098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig172:4925..7854+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGCGGCAGCCGTGGCTCCGCGTTTCTTTGCCTTCGAAACGAGCGGG
TTGACAGATACAGACGGCAACGATCGGTTTTCCACCTAACGTCACATCGA
CGAGGATGTTTTTGACCGGAAACAGCGCGCGGAGTGTGATGGTGGGAGTG
GGGCGAGCGCCCGGGTTTGCCAGCTCGCTAGTCCGATGCAGTGGTGCGTA
CAACTCTTGGCTCACACCGAAAGAAGCCGACTTACGGTCATTGGCCACCG
TCGCGGAGCGGCGAAGGGGTGGCAGCCGTGGACAGGGTGATGGGCATGCG
GGGAGAAGGTCCGTCGCGCAGGCGAAACGTGCGGGGCGCACACAGCATAG
GAACGCCGATGCTCCTCGGTTCCAGCCTTTCGGGCGCTCGGGTGGAGAGG
GGTCCAAGGTCGCCGAGAGACTCTATGAAGATTTTGGCATAAACAGCATG
AAGAAGTACTCCCCCGAGGCGACGGACGAGCGAAAAAGAGTCCTTACATG
GCTCGAAGGGACAGTCAGGATGAGCTCCCGGGCTATCGCGGATATGGTGG
AGCAAGAGCCACGCATTGCGGAGCAAGAGACCGGCGCGATATCCGCGAGG
CTGGCGTGGCTGAAAGAGAGACTGCAGCTCAGCGACGAGCAGATCAGGAG
CCTGGTGCACAGGAGGCCGTCCGTACTTTGCCGGAGCGTTGACGATAGCA
TGGAACCCAAGGTGCAGCAGCGATTGATACGCATTCGATGCTGCGGCCGT
CACACAGGGTTCTGCGCATAACGCGGGCTGGCCTCTCTCTCACCCGTCCT
ACTCGTGTTTTGTGACCAGTTTTGCATTTTTCATCCGACGTTGATCAATG
CCTGCAATCGTTTATGATGTTGCGTCCACTCTGTTGCGTTCACTCTTGGT
TTTTTCCCCAAGGTTCAATGGCTCCAAGAGAAACTACGCCTGAATGCGGA
CGAGGTGGCGACAATGGTCTCCTCCGCACCAAACGTCCTAACCATCAGCA
TCGAAGGCAGCATGGCACCTAAGCTAGACTGGCTCTCCCGGCGGCTGATG
CTCTCCAACGAAGAGCTGGCTGCGGTAGTGACCACGTGTCCTCAAGTGAG
TAGCGCGATGAGCTCGAAAGTGCTCAAAAATACTGTTCTCAATGGGATGT
ATTTTGTTCACAGCGTGTATGTTTCCGGTCGCCTTTGGGCTTGGTTGCTT
GGCTGCGTGGTTTCATTGGATAATGGAGTGTGGGGGAGTACAAACAACGT
ATGAATAATTGCAACCGCGCGTTCAGCGGACTTGAGATATGCTTTTCCCA
ATTTGCGCCATACACCCCCCCCCTTCAACCAACGGTGCGTCCACTGATCG
TCTATGGCGGATCTCCCGTCCTTCATTCTCTATTGAGGCGAGCTGTTGCT
CCCGTTTGCTCCTACGGCCTCTACCGCAGGTGTTGACCAGTAGCATCGAG
GGCGCGCTCGAGCCAAGGCTAAGGTGGCTCCACACAAACCTGCAGATCGG
TGGGTCTGTCCTTCGCGAGCGGGTGCTAAGCTATCCCTGGCTGCTGAACC
TCAGTGAGAAGGATAAGTTGGTGCCGACGTTCGACTTCCTGAAGACGGAA
CTCCTCCTCGACGAGGCCGAAATCAGGAAGACCCTCTTTCGAAACCCGCG
CATGTTCCTGACTCCGATGAAGCAAACATTCGACTCAACGAAGAAGTGGC
TTTGTACAAGCGTAGGGCTGGAGGAGGAGGAGGCGGTGAAGGTGCTGACG
AAGGATGCGCGACTGCTGCTGCGGAGTACGGAAGTTCTGGACACCAAGGT
TTGGTCTCTGCACGCCCCTTGAATATTTGTGAACTCTCAAACGCTTTGAG
GAGGTTTCGACTGAAGTTTGTTCTATGGACATTTTTTCCACGCCACAGAC
TCGAGTGATTTAGTATCCACGTATGCATCGAGTGGATTCGCCTTGTTTCC
GAAACGTTCTCCTCATCTTTCTCCGACGATTTCGCACTTGGAGTGGTCAC
GACGGGGTTGACCTGACATTGACGCGAGAAATCCTGTAGCTCAACAAAGC
GGGTGATCGGATACCACAGTTATGTACCCGGCAGGTGTTGTTATCAAAAG
CCGCCTTTTTGATACCGCCAGGCGCACAGCAGCCCCAACGTAAAACAGTA
CCCGTGAGCTCACGAAGTCTCATGTGCTTCCGGAGTGCTTGATACGCATT
CACCATTATGATTGTTCTGGTTTTGGCACCGCACATGGTTTCGATCTAAA
TAGTCGCTCTGCCTGTCCGAGCCATAATACGCACCAACGAATGTACGAGT
GCAGAGCACAAATAGAAGCGTATATCATACTCTTGGACGCCTGCTGTAGA
ACGTTCGTTGGCTTGCTACGCCTGTGCGCTGTTCGATGCTTTTCTGTCCT
TCCGACCTCCACGTCGTGTTCAGGTGGCCTTTTTTTGCCAAGAGATGGGC
GCCACCCTGGAGGACGTTCGGGCCGTGCTTACAACGAGCCCTAACTTCTT
GCTCGTAAGCATAGATCTCATGCTGGCGCCACGGGTGGCGGCATTGAAAG
ATGCCGGGGTAGAAGTTTCGTTTCCGGCGCATTGGAATGACCTCGCGTTC
GGCCCTCGAGGAGAGGCGTTTGATTTCTGGGTGAGAAGGCAAGCTAGCAG
GTCACGCAGATAGAACAGAGCGTGGATGTTGTTACGAAGTCAGTAACAAA
TGACGTTTTCGCTCTTCCCGTGCATGCGAAAGCTGCCGTGCGACCCTCGA
GGAGACCTACCGGAGAAGTCAAGCTGCGTGGGCACATCACGTAGATTTGA
AACAAGTGGATAAAGCCGTTCACGGGTTGGTTTGTGTGGAGCTAATTCTA
CGACAGCGCGGTGCTTCTTCTGGTCGGCGTGAACTCTGAGTATGCAACAG
CACACGACATTCAGAAGGTCGCGGACGCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig172:4925..7854+

>mRNA_Ecto-sp13_S_contig172.5098.1 ID=mRNA_Ecto-sp13_S_contig172.5098.1|Name=mRNA_Ecto-sp13_S_contig172.5098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig172:4925..7854+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTTGACCGGAAACAGCGCGCGGAGTGTGATGGTGGGAGTGGGGCG
AGCGCCCGGGTTTGCCAGCTCGCTAGTCCGATGCAGTGGTGCGTACAACT
CTTGGCTCACACCGAAAGAAGCCGACTTACGGTCATTGGCCACCGTCGCG
GAGCGGCGAAGGGGTGGCAGCCGTGGACAGGGTGATGGGCATGCGGGGAG
AAGGTCCGTCGCGCAGGCGAAACGTGCGGGGCGCACACAGCATAGGAACG
CCGATGCTCCTCGGTTCCAGCCTTTCGGGCGCTCGGGTGGAGAGGGGTCC
AAGGTCGCCGAGAGACTCTATGAAGATTTTGGCATAAACAGCATGAAGAA
GTACTCCCCCGAGGCGACGGACGAGCGAAAAAGAGTCCTTACATGGCTCG
AAGGGACAGTCAGGATGAGCTCCCGGGCTATCGCGGATATGGTGGAGCAA
GAGCCACGCATTGCGGAGCAAGAGACCGGCGCGATATCCGCGAGGCTGGC
GTGGCTGAAAGAGAGACTGCAGCTCAGCGACGAGCAGATCAGGAGCCTGG
TGCACAGGAGGCCGTCCGTACTTTGCCGGAGCGTTGACGATAGCATGGAA
CCCAAGGTTCAATGGCTCCAAGAGAAACTACGCCTGAATGCGGACGAGGT
GGCGACAATGGTCTCCTCCGCACCAAACGTCCTAACCATCAGCATCGAAG
GCAGCATGGCACCTAAGCTAGACTGGCTCTCCCGGCGGCTGATGCTCTCC
AACGAAGAGCTGGCTGCGGTAGTGACCACGTGTCCTCAAGTGTTGACCAG
TAGCATCGAGGGCGCGCTCGAGCCAAGGCTAAGGTGGCTCCACACAAACC
TGCAGATCGGTGGGTCTGTCCTTCGCGAGCGGGTGCTAAGCTATCCCTGG
CTGCTGAACCTCAGTGAGAAGGATAAGTTGGTGCCGACGTTCGACTTCCT
GAAGACGGAACTCCTCCTCGACGAGGCCGAAATCAGGAAGACCCTCTTTC
GAAACCCGCGCATGTTCCTGACTCCGATGAAGCAAACATTCGACTCAACG
AAGAAGTGGCTTTGTACAAGCGTAGGGCTGGAGGAGGAGGAGGCGGTGAA
GGTGCTGACGAAGGATGCGCGACTGCTGCTGCGGAGTACGGAAGTTCTGG
ACACCAAGGTGGCCTTTTTTTGCCAAGAGATGGGCGCCACCCTGGAGGAC
GTTCGGGCCGTGCTTACAACGAGCCCTAACTTCTTGCTCGTAAGCATAGA
TCTCATGCTGGCGCCACGGGTGGCGGCATTGAAAGATGCCGGGGTAGAAG
TTTCGTTTCCGGCGCATTGGAATGACCTCGCGTTCGGCCCTCGAGGAGAG
GCGTTTGATTTCTGGGTGAGAAGGCAAGCTAGCAGGTCACGCAGATAG
back to top