prot_Ecto-sp13_S_contig17159.5077.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17159.5077.1
Unique Nameprot_Ecto-sp13_S_contig17159.5077.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length201
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.370e-125
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 0 
Query:    1 MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKF 197
            MLRLVALVISISVLFPWL SERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFV L+RVPTMIGSTRAACVC+VLAVLATV SAVFWNG+LITGGYFWVTNTSNESHGRWISLSFGATQTVAG+LMAL VLFTMTGERFSSL+VCCKTSQRVKF
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKF 197
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.240e-124
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 0 
Query:    1 MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKF 197
            MLRLVALVISISVLFPWL SERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKF ELT LNLWSISSLAIAILIASIVQSFVKL+RVPTMIGSTRAACVCLVLA+LATV SAVFWNG+LITGGYFWVTNT NESHGRWISLSFGATQTVAGMLMALAVLFT++GERFSSLKVCCKTSQRVKF
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKF 197
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.920e-62
Identity = 101/174 (58.05%), Postives = 133/174 (76.44%), Query Frame = 0 
Query:   26 MRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKFRE 199
            M IF LHWAS V YV+SQ +MSVMV+NCWSS+  +GP IY LKF ELT +NLW+ISS+AI++LIASIVQ+F K++RVP +IGS+R    C+ +A+  T+ SA FWN +L+TG YFW+TN ++ +  RWISLSF  TQ +AG LMAL ++F  TG+R  SL VC +TS+R+K  E
Sbjct:    1 MNIFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKLCE 174
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: A0A7S2US30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US30_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.280e-26
Identity = 73/195 (37.44%), Postives = 117/195 (60.00%), Query Frame = 0 
Query:    2 LRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVK 196
            +RLVAL+++ S++  WL +    ++ + F +WAS +MY +SQ IM+ MV+NC  S +  G  IY +KF EL  +N  + SSL I   +  I++++ K +R       +RA  + + +A++ T  SA++W+ ++IT GYFWV +  N  HGRWI+LSF   Q++ GM+M   VL  +    + S   C K S RV+
Sbjct:   42 MRLVALLVAGSLVCSWLNNRWFIKLPVLFFNWASNLMYALSQQIMATMVINC--SCNFRG-IIYAIKFVELFSVNCIATSSLVIFYNLFMILKNYHKNRRFRAY-SQSRAIIIAMTVALVFTAASALYWDMLIITNGYFWVWS-ENPEHGRWINLSFTIVQSLVGMVML--VLLGVCISFYKSAVKCFKNSSRVR 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE1.370e-12595.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI2.240e-12494.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL8_ECTSI3.920e-6258.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2US30_9STRA6.280e-2637.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 176..200
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..153
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 153..175
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 116..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17159contigEcto-sp13_S_contig17159:638..3376 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17159.5077.1mRNA_Ecto-sp13_S_contig17159.5077.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17159 638..3388 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17159.5077.1 ID=prot_Ecto-sp13_S_contig17159.5077.1|Name=mRNA_Ecto-sp13_S_contig17159.5077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMV
LNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLK
RVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESH
GRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKFREL
*
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