mRNA_Ecto-sp13_S_contig17159.5077.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17159.5077.1
Unique NamemRNA_Ecto-sp13_S_contig17159.5077.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.610e-125
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 1 
Query:   13 MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKF 603
            MLRLVALVISISVLFPWL SERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFV L+RVPTMIGSTRAACVC+VLAVLATV SAVFWNG+LITGGYFWVTNTSNESHGRWISLSFGATQTVAG+LMAL VLFTMTGERFSSL+VCCKTSQRVKF
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKF 197
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.630e-124
Identity = 187/197 (94.92%), Postives = 192/197 (97.46%), Query Frame = 1 
Query:   13 MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKF 603
            MLRLVALVISISVLFPWL SERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKF ELT LNLWSISSLAIAILIASIVQSFVKL+RVPTMIGSTRAACVCLVLA+LATV SAVFWNG+LITGGYFWVTNT NESHGRWISLSFGATQTVAGMLMALAVLFT++GERFSSLKVCCKTSQRVKF
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKF 197
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.540e-62
Identity = 101/174 (58.05%), Postives = 133/174 (76.44%), Query Frame = 1 
Query:   88 MRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKFRE 609
            M IF LHWAS V YV+SQ +MSVMV+NCWSS+  +GP IY LKF ELT +NLW+ISS+AI++LIASIVQ+F K++RVP +IGS+R    C+ +A+  T+ SA FWN +L+TG YFW+TN ++ +  RWISLSF  TQ +AG LMAL ++F  TG+R  SL VC +TS+R+K  E
Sbjct:    1 MNIFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKLCE 174
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BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Match: A0A7S2US30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US30_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.610e-26
Identity = 74/200 (37.00%), Postives = 119/200 (59.50%), Query Frame = 1 
Query:    1 QLATMLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLKRVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESHGRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVK 600
             +A  +RLVAL+++ S++  WL +    ++ + F +WAS +MY +SQ IM+ MV+NC  S +  G  IY +KF EL  +N  + SSL I   +  I++++ K +R       +RA  + + +A++ T  SA++W+ ++IT GYFWV +  N  HGRWI+LSF   Q++ GM+M   VL  +    + S   C K S RV+
Sbjct:   37 SIANSMRLVALLVAGSLVCSWLNNRWFIKLPVLFFNWASNLMYALSQQIMATMVINC--SCNFRG-IIYAIKFVELFSVNCIATSSLVIFYNLFMILKNYHKNRRFRAY-SQSRAIIIAMTVALVFTAASALYWDMLIITNGYFWVWS-ENPEHGRWINLSFTIVQSLVGMVML--VLLGVCISFYKSAVKCFKNSSRVR 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17159.5077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE1.610e-12595.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI2.630e-12494.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL8_ECTSI4.540e-6258.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2US30_9STRA2.610e-2637.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17159contigEcto-sp13_S_contig17159:638..3388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size615
Hectar predicted targeting categorysignal peptide
Exons4
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.4785423-CDS-Ecto-sp13_S_contig17159:637..7991681462897.4785423-CDS-Ecto-sp13_S_contig17159:637..799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17159 638..799 -
1681462897.4878812-CDS-Ecto-sp13_S_contig17159:2031..21901681462897.4878812-CDS-Ecto-sp13_S_contig17159:2031..2190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17159 2032..2190 -
1681462897.500582-CDS-Ecto-sp13_S_contig17159:2631..28091681462897.500582-CDS-Ecto-sp13_S_contig17159:2631..2809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17159 2632..2809 -
1681462897.5126333-CDS-Ecto-sp13_S_contig17159:3272..33761681462897.5126333-CDS-Ecto-sp13_S_contig17159:3272..3376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17159 3273..3376 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.5201898-UTR-Ecto-sp13_S_contig17159:3376..33881681462897.5201898-UTR-Ecto-sp13_S_contig17159:3376..3388Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17159 3377..3388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17159.5077.1prot_Ecto-sp13_S_contig17159.5077.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17159 638..3376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17159.5077.1

>prot_Ecto-sp13_S_contig17159.5077.1 ID=prot_Ecto-sp13_S_contig17159.5077.1|Name=mRNA_Ecto-sp13_S_contig17159.5077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MLRLVALVISISVLFPWLRSERRGRMRIFFLHWASGVMYVMSQFIMSVMV
LNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVKLK
RVPTMIGSTRAACVCLVLAVLATVPSAVFWNGILITGGYFWVTNTSNESH
GRWISLSFGATQTVAGMLMALAVLFTMTGERFSSLKVCCKTSQRVKFREL
*
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mRNA from alignment at Ecto-sp13_S_contig17159:638..3388-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17159.5077.1 ID=mRNA_Ecto-sp13_S_contig17159.5077.1|Name=mRNA_Ecto-sp13_S_contig17159.5077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17159:638..3388- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTCGCGACCATGCTTCGGCTGGTGGCTCTCGTGATCAGCATCTCCGT
GCTTTTCCCGTGGCTTAGGTCCGAGCGGCGAGGACGCATGCGGATTTTCT
TTCTCCACTGGGCCAGGTGATTTGTTTGCGGCTGCTGCTGTTTGCGATTG
TTTTCGATGTTATTGATCGTTTTGTTGTTGTTGTTGCTGCTGTTGGTTTG
GTTTCGGGTGTCGTGGGTGTTATCGCCGTGTTGTTGTTGTTGTTGCTGCT
GTTTAATCGTTGTTGTCGTAGTCGTAGTCGTCGTTGCTGCTGCTGGCGCG
TGATTACGGACATCTTGCCGCTGGTTGAGGATAAACGTGTTTTTTACCTT
CCCCTTAAGACCCGCCTCTTGTGCCTGTCCGGCACATTTTCTTGTCGCGT
CGTACCGCTCCAATCGGCAGCACAACACACGCCAATGGTTGCGATGGCAG
GCCGACCCACACAAGAAGGTAAACACATCATTTCGGTGATGGGTGCTCAA
CAATCGTGTTGCTCGCCCCCCCCCCCCCTCCCTCCTCCTTCCCGCGTCCC
GCCAACACTTCCTTGAACAATTTTTTCAGCGGCGTCATGTATGTCATGAG
CCAGTTCATCATGTCAGTGATGGTGCTGAACTGCTGGAGCTCCAGGGATG
ACTCGGGCCCCTTCATCTACTTCCTCAAGTTCTGGGAGCTGACGGTGCTG
AACCTGTGGTCAATCTCCAGCCTCGCCATTGCCATTCTCATCGCGAGCAT
CGTTCAGGTATGACCATCCTCCCGTCCCACCACTACCGCCGTCATCGCAA
GCGTCGTTCAGGGGTTGTACGAACGGAAAACTACAGTTCGATGTCCACTC
TCGCCAACAACATTCTCATCACGAGCATAATTCGTATTGTCACGCCAACA
TTGAACTAAGTATGCTCCATCTCCCGTTCACCGTTGCTATTCTCATCACG
ATCCTAGTTCATAGGATCATGCCACCGAGACATATTGATGCATGTCCTGT
CCCAGCATTGCCACCGTTATCACGATCATATTCCAGGGATCATACCAACG
AGAAATATGTGTTGATCCATCTCCAACCTCTCGCCATCGAGATTACCATC
GGTCAGGGTTACGGTAACCCAACCTCATATCCTCTCCCGTGTGCGGTCTT
GTTGACCCGCCCTTTGCGTCCATGAAACGCGTTGTGTGGCGTCTTCAGTC
TTTTGTCAAGCTGAAACGAGTACCGACGATGATCGGGTCCACGCGGGCGG
CCTGCGTCTGCCTGGTGCTGGCGGTTTTAGCCACGGTTCCTTCCGCGGTC
TTCTGGAACGGCATCCTAATCACGGGCGGGTACTTCTGGGTGACGAACAC
GAGCAACGTGAGTAGAAGGACGGCCAAGCAAAGCGCCCAACGGTGCTTGA
GCATGCCCTTCGTAGGCATAGGGAGCGCTATAGTGTGGTGGGGAGGTTGA
GAGGTAGTTAGCTCCCGGTACAGAACGGCCACCGGAATACGGGTGTATCA
CTACACACGGAGTGTAGGTTCTACCGATCGATGTACCGTAGGGGACATGG
CGGATGATACCACACCCGCGGGACTGGTTTTCAAAGGCAGGTTACTCCAT
AACGAAGATGTACAAATCAAAGGAAACGTAAACTAAAGCGCCCTCGGCGA
GAGGGTTCCAATGCGGCCATCTTTCCGCGCCGCCACACTCTTTCCTACGC
AGTAGTCGAGCTTCGAAAATCGGTCCAGAGCGTGTGATATCTTACGCAAC
CTACTGTAGTCTTGTAGGATACGGAGCATTCGACCCAAATATGTGTAATC
ACACGCACTCGGAGGGTACCTTGGGAATTGTAAATCGAATTGTAACTCGT
TGGTGGTACAGAATGGGCCCAGATTTGAAACGTCGAAATCAGGTAGAGGC
TCAGTTTCTACTTTCGTCGAGCACAGATTGTTATACAGCCTGCGTTCCAC
GGTTATACACCACGGTTTTTTTCCCGGAAAATGCAGTCAAAACGGGCCCG
GAAATAAGAGACGTCATAATCGGGTCGAGGCTCGACTTCTTACTTGTTCG
CCACTGTTGAGCACAGGTTATTATGTGGCAGAGTTGAGTGCAGGATCCAT
CGCTGAGCTGTGTTTCTCAGACGTATTCTCGATCTTTTTGTGGAACTTGA
GCCTCTGTTTTTAAACGAGATGTAACTCCGGGCCCCTTCCGTACCTGAGC
CATAAGTACTACGCATGCGTGTTGCCTTCTGTTGATTGTGCATCTTCTTC
GTCGTGGAAGTAGTCGAGCGTCGAATTGTGGTCCGGGGGGGGGGTGCGGT
ATCTTGTGCGGTATCTTGTGCGACCTATGGCGCCCAAATGACACGGGGAA
ACAACGGTACAGTAGTACTGTCGTGAGCGATTCGATTCGCCATCTGAGAT
GTTCGGACATCGCAAAAGGCATGTCGTGTCTTCATTTGAAGGCGTACGTA
GAGGTTTTGCTTGGTGTTATTCCATGTGTATTGGTTGCACGTTCCAACCT
GAAAACGAAAAACGTTGTGTGTTCGCCCTTTTCGCTGCGCGTGCGTGCTG
CGTTGCTCGTGCTACACCACCGCGCTTGCCTGCTTGCAGGAGAGCCATGG
TCGGTGGATCTCCCTTTCCTTCGGGGCAACGCAAACCGTGGCGGGCATGC
TGATGGCGCTGGCGGTACTGTTCACGATGACGGGAGAGCGGTTCTCGAGC
CTTAAAGTGTGCTGCAAGACGAGTCAACGCGTCAAGTTCCGTGAGTTGTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17159:638..3388-

>mRNA_Ecto-sp13_S_contig17159.5077.1 ID=mRNA_Ecto-sp13_S_contig17159.5077.1|Name=mRNA_Ecto-sp13_S_contig17159.5077.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17159:638..3388- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCGGCTGGTGGCTCTCGTGATCAGCATCTCCGTGCTTTTCCCGTG
GCTTAGGTCCGAGCGGCGAGGACGCATGCGGATTTTCTTTCTCCACTGGG
CCAGCGGCGTCATGTATGTCATGAGCCAGTTCATCATGTCAGTGATGGTG
CTGAACTGCTGGAGCTCCAGGGATGACTCGGGCCCCTTCATCTACTTCCT
CAAGTTCTGGGAGCTGACGGTGCTGAACCTGTGGTCAATCTCCAGCCTCG
CCATTGCCATTCTCATCGCGAGCATCGTTCAGTCTTTTGTCAAGCTGAAA
CGAGTACCGACGATGATCGGGTCCACGCGGGCGGCCTGCGTCTGCCTGGT
GCTGGCGGTTTTAGCCACGGTTCCTTCCGCGGTCTTCTGGAACGGCATCC
TAATCACGGGCGGGTACTTCTGGGTGACGAACACGAGCAACGAGAGCCAT
GGTCGGTGGATCTCCCTTTCCTTCGGGGCAACGCAAACCGTGGCGGGCAT
GCTGATGGCGCTGGCGGTACTGTTCACGATGACGGGAGAGCGGTTCTCGA
GCCTTAAAGTGTGCTGCAAGACGAGTCAACGCGTCAAGTTCCGTGAGTTG
TGA
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