mRNA_Ecto-sp13_S_contig17078.5031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17078.5031.1
Unique NamemRNA_Ecto-sp13_S_contig17078.5031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17078.5031.1 vs. uniprot
Match: D7G2I8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I8_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.470e-99
Identity = 153/160 (95.62%), Postives = 155/160 (96.88%), Query Frame = 1 
Query:   37 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMENSTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDGLGSEAFGEAFFAHAALLAATTAHSAGDAAAQLADTGAAMVFA 516
            MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAME+ TKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWND LGSE FGEA FAHAALLAATTAHSAGDAA QLA+TGAAMVFA
Sbjct:    1 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMEDRTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDVLGSEPFGEALFAHAALLAATTAHSAGDAATQLAETGAAMVFA 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17078.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2I8_ECTSI3.470e-9995.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17078contigEcto-sp13_S_contig17078:639..3759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size519
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.953575-CDS-Ecto-sp13_S_contig17078:638..9171681462893.953575-CDS-Ecto-sp13_S_contig17078:638..917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17078 639..917 -
1681462893.962676-CDS-Ecto-sp13_S_contig17078:1686..18511681462893.962676-CDS-Ecto-sp13_S_contig17078:1686..1851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17078 1687..1851 -
1681462893.9714365-CDS-Ecto-sp13_S_contig17078:3684..37591681462893.9714365-CDS-Ecto-sp13_S_contig17078:3684..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17078 3685..3759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17078.5031.1prot_Ecto-sp13_S_contig17078.5031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17078 639..3759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17078.5031.1

>prot_Ecto-sp13_S_contig17078.5031.1 ID=prot_Ecto-sp13_S_contig17078.5031.1|Name=mRNA_Ecto-sp13_S_contig17078.5031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
GRSAPGHRRSLSMEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDL
TKDMNDPEAVKWARKNAKIAQSAMENSTKQVRGAMRKAPRWQTLSRDYRF
WLGLVVALSLVSSVISASGRSHDLVVWNDGLGSEAFGEAFFAHAALLAAT
TAHSAGDAAAQLADTGAAMVFA*
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mRNA from alignment at Ecto-sp13_S_contig17078:639..3759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17078.5031.1 ID=mRNA_Ecto-sp13_S_contig17078.5031.1|Name=mRNA_Ecto-sp13_S_contig17078.5031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3121bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17078:639..3759- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGTTCGGCGCCTGGACACCGCCGCTCGCTTTCTATGGAAGGGGTGAA
CCCCCGCGAGGACGCGGATTTCGAAGTGAGTTTTGAACAATTCCGGAAAA
AACACCACACCCCGACACAGGAGGGACTGAAATTACTTGTAGTGAACGGG
GTGCATCCAATGTGTTCCTCAACCTCCTCCCCGACTTCAGAAAGCTCGAG
TCGCGGATCAACAGGAACGCCTGCCTCCCACAGCAGTGCTGATCTGTTTT
GTGGCGAACCTCTGTTTTCACGTTTACTGTCAGGGATCAGTTTGAAATTT
GTATTGTTTTCCTTCCCGCTCAGTTCAAGTTGGGCCACCCTTCCTGCTGC
TTAATTCCAAACGTAGGCAGTCTCAACTCATGGTGTACAGCAAGGCTTCC
TTAGGTTAGACAATGGCTGCCGTCGACGTCTCCCAGAAGAAGCCCGGGTG
TTGTGATAGCGGACGTGTCACCAGTTATAGACAGCAATCGGTGTTTCCAA
AGACAGAGCACACCTACATGCTGCTGTCCATCCCCGCGGCGTATGACGTG
TACCCGGCGGGAATGCTGGAGATGTTTCCGTCCGTTTCTTTTTTATTTGA
AAAGTACACAAATTCTCCCGGCGAGACCATTCGAGATATAACCTTCTGCT
GTAGTCGAAAGGGATGTGTTGAAGTCTTTTCAGTGAGTGGATGGAAATCG
GCTGGAAACTGGGGTTATTTTTTTTAGCCTGACACTATTTGTACACTGAA
TTGTATCGATGATGCCAGCTGTTGCTAAGAACAAAAACATCTGCATAGGT
GGTTTTCTGTAAACTTCATATACACCGACTTCTGTCCAAGAAGAGCCGGA
GTGCAGTACGACCACTTTTTGGCAGGCACCTTTGCGCCTGTGCGCGAACA
CACACGTTGCCCGGCGTGTCGGGAGCACTGGAGAGTCCCCCTGCCTCTCT
CTCATCGCATGATACTGGGTGTATATGCAAACATGCGATTGGTTTGCGAC
AGCAGTACTGAGAGGGTTTCTGATCTAAACCCAAGGTATTTGTGAGGCCC
AATATCGAAATATCGAGCAACCAGATGCCGGCTCAGCAAGTGTTGATGCT
CGACGTTACTTTGGTAGCGGACATGGTGGAGCATCCGACGTGGGCGAGGG
CTCGCCCAGATCTGGTTGTTTCTGCGGCCTCACGGTCGAATGCTGCCAGT
GTTGTCAGGAAAATCCGCATATGCGAGTCCATAGATACCATTCACGATCA
ACTGCTGTGCACCCACAGTCCAGGAGAAGGGGCCTGTGACGGCACGTATA
GCAGTGGATCGTAAATGGTATGGAGCCAGACTTCTCGGACTGCAGCTGCA
GCCTTGCTACAGCACGACCCCTGCACCAGATCCGGTCGTGCTAACGCGTA
TGTCGCTGCTCCATCATGTCCCCTTCCAACTTTTGCATGTAACATCCAAC
ACTTTGGAACGCAATTACCCCCGTTCAAGCACCCACCGTGTCGCCTGTTC
TGGCGCACAAAAGACCGGCAAGACTCTGCAGGAATAGAGCAACATCCTGG
AGATATTCTTGTACGTCAGTTCAAAGCCCGGAATTGCTCTACTCCTTTGG
ACACCGCGTAGCTGACATGATTTCATGGTTCTTGGGAATCCTCCCGCCAA
GTATACAACTTGCGACATAGACTCATGTGCCGGGGGCTCATCGTGCGTCT
CGTACGCACAGGGTGCGTGGTAGCGGGGGATGCACCCAACGGAGACCACC
AAGCCAACTCCACCGAGCGAGTGTTTCGATTTCGAGCGGTGTTCGAGACC
GACAGTTTAGCCCCGAGAGAGACGTTCCTGGTTATTATCGTGCTCGTTAA
TTGTCTCGCTCTCTCTCTCTTTCTCTCTTACAACACACCTGCGCCCGCAC
TGGAACAGATGACGGTCGACTGGGATGAAGAGCTGCGCAAGCTTAACGCG
AGCCAGTACGGGAAGCGGCAGGAGCGCGACTTGACGAAGGACATGAACGA
TCCGGAGGCCGTCAAGTGGGCCAGGAAAAATGCGAAAATTGCTCAGTCCG
CCATGGAGAACAGCACCAAACAGGTGATTGATGAGCGAGAGACAAGACGA
CAACGCCCGTAGACGTGCCAAGCGTGGAGATGGAGCGAGATCCCGGAATT
GACATTTCCCGCCGTTTTGATGCGACATCTGTTTGTGGATGGTTTTCCAC
TTTCGAGCAGAGCGTTTTCGGGGGAGTTTCCGCAAGTTTCTGACCAATAG
TCGTTCAAATTCTGCACGTGTGAGTCACGGAGATTCCAGGAGCACGCAAA
ACGACTGCGCCTACAGATGCCGTCGTACATCGCCTCCCGTGGCTTAACCC
TCTCGCTTGTGCTGGTGTGTGCCGCTCCCCCCCTCCCGGTGTTTTGTTTT
CGGTGTGTTGGGGATTTTTTTGCCCGCCCCGGCGCTCTCCAGGAAACCAA
CAACATTTTGGTCCGCATCTCGTAGGTTCCGGTGCCACCGGTGATGTGTG
TACACCCCTGGGTCAACGAGACCATCGCTGTAATTCGGTGCCGGAGGCCC
GTTGATCCCCACATCAGTTTCTACCAGAGCACGCCACCAGTGCGTCTTGT
TTTTTTGCCCCAAAACACTTTTTCTGTGCCACTACTGCGTCCACGTGTTG
CTCCTTCTCTCGTGTACAGCAGCCCGACGCTCTGCAGTGCCTCCTCAACC
GATCTCTTTTCCCTTTTTCTCGTTCTCCCCCGTAGCGATGACGTATTTTG
GTGCTGAGCCGACACGCCCATTTCTGAGCTGAACCGCCATTTTTTTGCCC
CCACGCGACGACTTAACTCCTCGTCCCCTTACACTCATCCAGGTTCGGGG
CGCCATGCGCAAGGCTCCCCGCTGGCAGACGCTGTCCCGCGACTACCGAT
TCTGGTTGGGGCTCGTGGTGGCCCTAAGCTTGGTGTCCTCCGTGATCAGC
GCCTCCGGGAGATCCCACGACCTGGTGGTCTGGAACGACGGTCTGGGGAG
CGAGGCTTTCGGCGAGGCATTCTTCGCGCACGCCGCGTTGCTGGCCGCGA
CCACGGCGCACTCCGCTGGCGACGCGGCGGCTCAGCTGGCGGACACCGGG
GCGGCGATGGTGTTCGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17078:639..3759-

>mRNA_Ecto-sp13_S_contig17078.5031.1 ID=mRNA_Ecto-sp13_S_contig17078.5031.1|Name=mRNA_Ecto-sp13_S_contig17078.5031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17078:639..3759- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGTTCGGCGCCTGGACACCGCCGCTCGCTTTCTATGGAAGGGGTGAA
CCCCCGCGAGGACGCGGATTTCGAAATGACGGTCGACTGGGATGAAGAGC
TGCGCAAGCTTAACGCGAGCCAGTACGGGAAGCGGCAGGAGCGCGACTTG
ACGAAGGACATGAACGATCCGGAGGCCGTCAAGTGGGCCAGGAAAAATGC
GAAAATTGCTCAGTCCGCCATGGAGAACAGCACCAAACAGGTTCGGGGCG
CCATGCGCAAGGCTCCCCGCTGGCAGACGCTGTCCCGCGACTACCGATTC
TGGTTGGGGCTCGTGGTGGCCCTAAGCTTGGTGTCCTCCGTGATCAGCGC
CTCCGGGAGATCCCACGACCTGGTGGTCTGGAACGACGGTCTGGGGAGCG
AGGCTTTCGGCGAGGCATTCTTCGCGCACGCCGCGTTGCTGGCCGCGACC
ACGGCGCACTCCGCTGGCGACGCGGCGGCTCAGCTGGCGGACACCGGGGC
GGCGATGGTGTTCGCGTGA
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