mRNA_Ecto-sp13_S_contig17037.5011.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17037.5011.1
Unique NamemRNA_Ecto-sp13_S_contig17037.5011.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17037.5011.1 vs. uniprot
Match: A0A6H5KSK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.060e-44
Identity = 91/137 (66.42%), Postives = 106/137 (77.37%), Query Frame = 1 
Query:    1 QQHESDHFAMELLQSLYSQQDEHQRLVDQLKSLSLFWDKQQKWNQYASKNRHLKEMVRQVQMKHEKQSEQRRIQKLMMQHXXXXXXXXXXXXXXXXXXXXXXXXXXHRQEWKGVMDDLNSHQAAVHTHLSGRIVTKE 411
            +Q E D  AMELLQSLYSQQDEHQR+VDQL+SLSLFW+KQQKWNQYA+KN+ LKEMVR+VQMKH+ Q+EQ RIQK M+QH  XXXXXX                  HR EW+G+M+DL SHQAAVHT+LSGRIV +E
Sbjct:  203 EQQERDDLAMELLQSLYSQQDEHQRVVDQLQSLSLFWEKQQKWNQYANKNKQLKEMVRRVQMKHDTQNEQWRIQKPMIQHEHXXXXXXRRKEQLVEARAVRQQLDAHRHEWEGIMEDLESHQAAVHTNLSGRIVIRE 339
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BLAST of mRNA_Ecto-sp13_S_contig17037.5011.1 vs. uniprot
Match: Q8QN63_ESV1K (EsV-1-227 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN63_ESV1K)

HSP 1 Score: 149 bits (377), Expect = 1.450e-42
Identity = 91/164 (55.49%), Postives = 108/164 (65.85%), Query Frame = 1 
Query:   16 DHFAMELLQSLYSQQDEHQRLVDQLKSLSLFWDKQQKWNQYASKNRHLKEMVRQVQMKHEKQSEQRRIQKLMMQHXXXXXXXXXXXXXXXXXXXXXXXXXXHRQEWKGVMDDLNSHQAAVHTHLSGRIVTK-EGEQRQCDQNKEVLMRLIRTLQQRTHQT-QVC 501
            D FAMELL+SL SQ + HQR+VDQL SL  FWDKQQKWNQ A KN+ L+E + Q+QMKH+KQ E+RRIQKL+MQH                          HRQEW+   DDL +HQAAVHTHLSGRIVTK + EQRQ D+NK VL  ++  L +R  Q  QVC
Sbjct:   40 DGFAMELLESLCSQLNGHQRVVDQLDSLHHFWDKQQKWNQSAQKNKCLREKILQLQMKHKKQDEERRIQKLIMQHECEVREQICRKEQSMEMQAVQKEMTDHRQEWQIAKDDLEAHQAAVHTHLSGRIVTKNDEEQRQRDKNKSVLKMIMHELTRRRQQKEQVC 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17037.5011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSK8_9PHAE5.060e-4466.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN63_ESV1K1.450e-4255.49EsV-1-227 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17037contigEcto-sp13_S_contig17037:15..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.6932418-UTR-Ecto-sp13_S_contig17037:14..411681462892.6932418-UTR-Ecto-sp13_S_contig17037:14..41Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17037 15..41 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.705928-CDS-Ecto-sp13_S_contig17037:41..5151681462892.705928-CDS-Ecto-sp13_S_contig17037:41..515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17037 42..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17037.5011.1prot_Ecto-sp13_S_contig17037.5011.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17037 42..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17037.5011.1

>prot_Ecto-sp13_S_contig17037.5011.1 ID=prot_Ecto-sp13_S_contig17037.5011.1|Name=mRNA_Ecto-sp13_S_contig17037.5011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MELLQSLYSQQDEHQRLVDQLKSLSLFWDKQQKWNQYASKNRHLKEMVRQ
VQMKHEKQSEQRRIQKLMMQHQYEMEEEQRRKEHVMEMQKVQQQLDKHRQ
EWKGVMDDLNSHQAAVHTHLSGRIVTKEGEQRQCDQNKEVLMRLIRTLQQ
RTHQTQVC
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mRNA from alignment at Ecto-sp13_S_contig17037:15..515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17037.5011.1 ID=mRNA_Ecto-sp13_S_contig17037.5011.1|Name=mRNA_Ecto-sp13_S_contig17037.5011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17037:15..515+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAACATGAAAGCGACCACTTCGCCATGGAGTTGCTACAAAGCCTTTA
CTCTCAGCAAGATGAGCACCAGCGCCTCGTTGATCAGCTGAAAAGTTTGA
GCCTTTTTTGGGATAAACAGCAGAAATGGAATCAGTACGCCAGCAAGAAC
AGGCACCTGAAGGAGATGGTTCGTCAGGTACAGATGAAGCACGAAAAGCA
AAGTGAACAGCGGCGGATCCAGAAACTTATGATGCAACACCAATACGAGA
TGGAAGAAGAGCAGCGTCGGAAGGAGCATGTGATGGAGATGCAGAAGGTG
CAACAACAGCTGGATAAGCACCGACAGGAATGGAAAGGTGTGATGGACGA
CCTCAACTCTCACCAAGCAGCCGTGCACACCCACTTGTCGGGTCGGATCG
TGACGAAGGAAGGCGAGCAGCGGCAGTGCGACCAGAACAAGGAGGTGCTC
ATGAGGCTCATACGCACACTGCAGCAGCGCACTCATCAGACCCAGGTGTG
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17037:15..515+

>mRNA_Ecto-sp13_S_contig17037.5011.1 ID=mRNA_Ecto-sp13_S_contig17037.5011.1|Name=mRNA_Ecto-sp13_S_contig17037.5011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17037:15..515+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTTGCTACAAAGCCTTTACTCTCAGCAAGATGAGCACCAGCGCCT
CGTTGATCAGCTGAAAAGTTTGAGCCTTTTTTGGGATAAACAGCAGAAAT
GGAATCAGTACGCCAGCAAGAACAGGCACCTGAAGGAGATGGTTCGTCAG
GTACAGATGAAGCACGAAAAGCAAAGTGAACAGCGGCGGATCCAGAAACT
TATGATGCAACACCAATACGAGATGGAAGAAGAGCAGCGTCGGAAGGAGC
ATGTGATGGAGATGCAGAAGGTGCAACAACAGCTGGATAAGCACCGACAG
GAATGGAAAGGTGTGATGGACGACCTCAACTCTCACCAAGCAGCCGTGCA
CACCCACTTGTCGGGTCGGATCGTGACGAAGGAAGGCGAGCAGCGGCAGT
GCGACCAGAACAAGGAGGTGCTCATGAGGCTCATACGCACACTGCAGCAG
CGCACTCATCAGACCCAGGTGTGT
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