mRNA_Ecto-sp13_S_contig17010.5001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17010.5001.1
Unique NamemRNA_Ecto-sp13_S_contig17010.5001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17010.5001.1 vs. uniprot
Match: D8LII7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-13
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1 
Query: 2299 KINEQPTISCAALGARLVQLRRGLGKARAKQLALAACRFPDKQVGL 2436
            +INEQPTISCAALGARLVQLR GLGKARAKQLALAACRFPDKQV L
Sbjct:   37 QINEQPTISCAALGARLVQLRPGLGKARAKQLALAACRFPDKQVYL 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17010.5001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LII7_ECTSI1.380e-1393.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17010contigEcto-sp13_S_contig17010:110..2931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2448
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionDomain of unknown function DUF4496
Ec32 orthologEc-18_003490.1
Cds size2448
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462891.9416983-CDS-Ecto-sp13_S_contig17010:109..2561681462891.9416983-CDS-Ecto-sp13_S_contig17010:109..256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17010 110..256 -
1681462891.9547863-CDS-Ecto-sp13_S_contig17010:487..21101681462891.9547863-CDS-Ecto-sp13_S_contig17010:487..2110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17010 488..2110 -
1681462891.9764702-CDS-Ecto-sp13_S_contig17010:2253..29311681462891.9764702-CDS-Ecto-sp13_S_contig17010:2253..2931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17010 2254..2931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17010.5001.1prot_Ecto-sp13_S_contig17010.5001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17010 110..2931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17010.5001.1

>prot_Ecto-sp13_S_contig17010.5001.1 ID=prot_Ecto-sp13_S_contig17010.5001.1|Name=mRNA_Ecto-sp13_S_contig17010.5001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=816bp
MVPPAPRENPALSKAILRSAARRIQLAARDGDGDGLTSRKKEEEERWCHI
VNKIWRAIGLTIEHSLLSAARGVRIESFGTFSLNALGRPRFFLSADFAAR
HRLLKYDVCSGGCLAGGSVNTRLNVARVAATAGSPRPETERAVNAILRSL
HQRLSTGRSVMLSFHPVAEFSCTPSGQATMRFLSRFRTKQKKMAGDATHV
RVGTAKASPLTTPWASAAAAAVAHGNPHGNVRGTSSAGCKHIAAAEPETG
RALQDFVGRKGDSVGRRPRSSNSTGSVQPENVIKAAGRPDTSIGFDDRRR
PSLTPSSNAASSTNRKATSISSSVQRSAVMEAEVKAANDTPASFGGSHTH
NNTRFLTAQGIPYPSSSILRDGQQGCHHGSDKGSSRGPSDVADEIEHCVQ
DEIRDLSAAHQLANLCNSKSRVGLAEHRQEQPRHHPEEQLSSLLRRQTLA
QAGEEGLRRLFETLRLTHVTDDRRRKDGGVVGRLSSRDLLLALRDVGTTL
TSAELAETTKLFRQQPDDRVSLPVVLAGIRIENCGRQWRQQAAAADVISE
EDTQPSSSVLGTKKVDTARELPVEASPKRFPSGLPWENFEHEVELSKSCF
PRAGWASNSEKGNSTALLSTPRLSDSSTVCELLQRKTVAVEGRARRNAGR
PQSQNAERIFDGIQLHRAPPGEGGDQSDGGCDKRANKVVVDSSAELLVGQ
DPDSDPSAVQQQARRQCWGDDNIGGERAAVAAASTAAPEDDIADLARIVF
NPPCSLEGLIRILEANKINEQPTISCAALGARLVQLRRGLGKARAKQLAL
AACRFPDKQVGLYIV*
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mRNA from alignment at Ecto-sp13_S_contig17010:110..2931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17010.5001.1 ID=mRNA_Ecto-sp13_S_contig17010.5001.1|Name=mRNA_Ecto-sp13_S_contig17010.5001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17010:110..2931- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCTCCTGCGCCGCGCGAGAACCCTGCTCTGTCGAAAGCTATTCT
CAGGAGTGCAGCGCGCCGGATACAGCTGGCGGCAAGGGACGGCGACGGGG
ATGGTCTTACGAGTAGAAAGAAAGAAGAAGAGGAGAGGTGGTGCCATATC
GTCAACAAGATATGGCGCGCTATCGGTCTCACAATCGAGCATTCTCTTCT
ATCCGCCGCCCGCGGGGTTCGCATCGAGTCCTTCGGAACCTTCTCCCTCA
ACGCCTTGGGCCGTCCCCGGTTCTTCCTTTCTGCCGATTTTGCCGCCAGG
CATCGCCTCCTCAAGTACGACGTGTGCTCGGGGGGATGCCTCGCGGGGGG
ATCTGTCAACACCAGGCTCAACGTCGCGAGGGTGGCGGCCACAGCGGGAA
GTCCCCGACCCGAGACAGAACGCGCTGTGAATGCTATTCTGCGTTCTCTG
CACCAACGCCTATCGACCGGAAGATCCGTGATGCTTTCGTTTCACCCCGT
CGCGGAGTTCTCATGCACCCCCTCCGGGCAGGCGACAATGCGGTTTCTGT
CCAGGTTTCGTACGAAGCAGAAGAAAATGGCAGGGGATGCCACCCACGTT
CGCGTGGGCACGGCAAAAGCCAGCCCATTAACAACGCCCTGGGCAAGTGC
CGCTGCTGCTGCGGTCGCACATGGGAACGTACGTGGAACTAGTAGCGCTG
GTTGCAAACACATAGGGCGGCAGAACCTGAAACCGGTCGCGCTCTCCAGG
ATTTTGTGGGAAGGAAAGGCGACTCGGTTGGACGACGACCCCGTTCGTCG
AACTCAACGGGGTCCGTGCAGCCACATGGGAACGTACGTGGAACTAGTAG
CGCTGGTTGCAAACACATAGCGGCGGCAGAACCTGAAACCGGTCGCGCTC
TCCAGGATTTTGTGGGAAGGAAAGGCGACTCGGTTGGACGACGACCCCGT
TCGTCGAACTCAACGGGGTCCGTGCAGCCAGAAAATGTAATCAAAGCTGC
CGGTCGTCCAGACACCTCCATTGGGTTTGATGACAGAAGACGGCCATCAC
TGACACCCAGCAGCAATGCTGCATCAAGCACAAACAGAAAGGCAACCTCT
ATCTCATCGTCTGTCCAACGCTCCGCCGTGATGGAAGCAGAAGTCAAAGC
GGCGAATGACACTCCAGCCAGCTTCGGTGGCAGTCACACCCACAACAATA
CTCGGTTCCTCACAGCACAGGGCATACCCTACCCTTCTTCTAGTATTTTG
CGTGATGGACAACAGGGCTGTCATCACGGGAGCGACAAAGGCTCTAGCCG
TGGACCCAGCGACGTCGCCGATGAAATCGAACATTGTGTACAGGACGAGA
TCCGCGACCTGAGTGCAGCACATCAACTTGCGAATCTCTGTAACAGCAAA
TCACGAGTGGGGCTCGCAGAACATCGACAAGAACAACCTCGGCACCACCC
AGAAGAACAGTTATCGAGTCTACTCCGACGACAAACATTAGCCCAGGCGG
GAGAGGAAGGACTTCGCCGTCTCTTTGAGACCCTTAGGCTGACCCACGTA
ACAGACGACCGCCGACGTAAAGACGGCGGCGTTGTCGGGCGTCTGTCTAG
CAGAGACTTGCTCCTAGCTCTGCGTGACGTTGGTACAACGCTGACCTCTG
CCGAGCTAGCGGAAACTACGAAATTGTTCCGGCAGCAGCCAGATGATCGC
GTCTCGCTACCAGTCGTCCTGGCCGGGATAAGGATAGAAAACTGTGGACG
ACAGTGGCGTCAACAAGCAGCAGCGGCTGATGTCATCAGCGAGGAAGATA
CGCAACCTTCCTCAAGTGTTTTGGGTACAAAGAAGGTTGACACAGCGCGA
GAATTGCCCGTTGAAGCTTCTCCAAAACGATTTCCATCGGGACTACCATG
GGAGAATTTCGAGCATGAAGTGGAACTGTCCAAGTCATGTTTTCCTCGTG
CCGGTTGGGCAAGCAACAGTGAAAAAGGAAACTCAACTGCGTTGTTGAGC
ACTCCACGACTGAGTGATTCCTCTACTGTTTGTGAACTTCTTCAGAGGAA
AACGGTAGCAGTAGAAGGGCGGGCACGTAGAAACGCTGGCCGACCGCAGA
GTCAAAACGCCGAAAGGATTTTTGACGGCATTCAACTGCACAGGGCGCCG
CCAGGAGAGGGAGGGGATCAGTCAGATGGTGGCTGTGATAAGCGTGCCAA
CAAGGTTGTCGTCGATAGCAGCGCAGAGCTACTAGTGGGGCAGGATCCGG
ATTCGGACCCTTCTGCTGTGCAGCAGCAAGCACGTCGCCAGTGCTGGGGC
GATGATAATATTGGTGGTGAAAGGGCCGCTGTGGCTGCTGCTTCTACGGC
TGCGCCAGAGGACGACATAGCGGATCTAGCGAGAATCGTGTTCAACCCGC
CGTGTTCCCTGGAAGGACTTATACGTATTCTTGAGGCCAACAAGGTGTGT
TGTGTGCGAAAGAATGGTATTTGCAAAGAGCTGCGTGATGACACAAGCGA
GAATTCCCAAGTATGGAAGGGTACGCGCGAAAACCCGATAAGCCGTGACC
CTTTCAACGATGCTATCACTTTCTTACAGTCTGCCCCCGCCCCACTTCAT
GCTCAGTCTAGTCTGTCGTGTTATGCGGTTCTTCCGGTTAAGAGCAAGTT
TGGCGCTTGTCCTCACCTCCCGCAGATCAACGAACAACCGACAATCTCCT
GCGCTGCCTTGGGAGCACGTTTAGTCCAACTGCGCCGCGGGCTCGGAAAA
GCGAGGGCTAAGCAGTTGGCCTTGGCAGCATGCCGCTTCCCTGATAAGCA
GGTGGGGTTATACATCGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17010:110..2931-

>mRNA_Ecto-sp13_S_contig17010.5001.1 ID=mRNA_Ecto-sp13_S_contig17010.5001.1|Name=mRNA_Ecto-sp13_S_contig17010.5001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17010:110..2931- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCTCCTGCGCCGCGCGAGAACCCTGCTCTGTCGAAAGCTATTCT
CAGGAGTGCAGCGCGCCGGATACAGCTGGCGGCAAGGGACGGCGACGGGG
ATGGTCTTACGAGTAGAAAGAAAGAAGAAGAGGAGAGGTGGTGCCATATC
GTCAACAAGATATGGCGCGCTATCGGTCTCACAATCGAGCATTCTCTTCT
ATCCGCCGCCCGCGGGGTTCGCATCGAGTCCTTCGGAACCTTCTCCCTCA
ACGCCTTGGGCCGTCCCCGGTTCTTCCTTTCTGCCGATTTTGCCGCCAGG
CATCGCCTCCTCAAGTACGACGTGTGCTCGGGGGGATGCCTCGCGGGGGG
ATCTGTCAACACCAGGCTCAACGTCGCGAGGGTGGCGGCCACAGCGGGAA
GTCCCCGACCCGAGACAGAACGCGCTGTGAATGCTATTCTGCGTTCTCTG
CACCAACGCCTATCGACCGGAAGATCCGTGATGCTTTCGTTTCACCCCGT
CGCGGAGTTCTCATGCACCCCCTCCGGGCAGGCGACAATGCGGTTTCTGT
CCAGGTTTCGTACGAAGCAGAAGAAAATGGCAGGGGATGCCACCCACGTT
CGCGTGGGCACGGCAAAAGCCAGCCCATTAACAACGCCCTGGGCAAGTGC
CGCTGCTGCTGCGGTCGCACATGGGAACCCACATGGGAACGTACGTGGAA
CTAGTAGCGCTGGTTGCAAACACATAGCGGCGGCAGAACCTGAAACCGGT
CGCGCTCTCCAGGATTTTGTGGGAAGGAAAGGCGACTCGGTTGGACGACG
ACCCCGTTCGTCGAACTCAACGGGGTCCGTGCAGCCAGAAAATGTAATCA
AAGCTGCCGGTCGTCCAGACACCTCCATTGGGTTTGATGACAGAAGACGG
CCATCACTGACACCCAGCAGCAATGCTGCATCAAGCACAAACAGAAAGGC
AACCTCTATCTCATCGTCTGTCCAACGCTCCGCCGTGATGGAAGCAGAAG
TCAAAGCGGCGAATGACACTCCAGCCAGCTTCGGTGGCAGTCACACCCAC
AACAATACTCGGTTCCTCACAGCACAGGGCATACCCTACCCTTCTTCTAG
TATTTTGCGTGATGGACAACAGGGCTGTCATCACGGGAGCGACAAAGGCT
CTAGCCGTGGACCCAGCGACGTCGCCGATGAAATCGAACATTGTGTACAG
GACGAGATCCGCGACCTGAGTGCAGCACATCAACTTGCGAATCTCTGTAA
CAGCAAATCACGAGTGGGGCTCGCAGAACATCGACAAGAACAACCTCGGC
ACCACCCAGAAGAACAGTTATCGAGTCTACTCCGACGACAAACATTAGCC
CAGGCGGGAGAGGAAGGACTTCGCCGTCTCTTTGAGACCCTTAGGCTGAC
CCACGTAACAGACGACCGCCGACGTAAAGACGGCGGCGTTGTCGGGCGTC
TGTCTAGCAGAGACTTGCTCCTAGCTCTGCGTGACGTTGGTACAACGCTG
ACCTCTGCCGAGCTAGCGGAAACTACGAAATTGTTCCGGCAGCAGCCAGA
TGATCGCGTCTCGCTACCAGTCGTCCTGGCCGGGATAAGGATAGAAAACT
GTGGACGACAGTGGCGTCAACAAGCAGCAGCGGCTGATGTCATCAGCGAG
GAAGATACGCAACCTTCCTCAAGTGTTTTGGGTACAAAGAAGGTTGACAC
AGCGCGAGAATTGCCCGTTGAAGCTTCTCCAAAACGATTTCCATCGGGAC
TACCATGGGAGAATTTCGAGCATGAAGTGGAACTGTCCAAGTCATGTTTT
CCTCGTGCCGGTTGGGCAAGCAACAGTGAAAAAGGAAACTCAACTGCGTT
GTTGAGCACTCCACGACTGAGTGATTCCTCTACTGTTTGTGAACTTCTTC
AGAGGAAAACGGTAGCAGTAGAAGGGCGGGCACGTAGAAACGCTGGCCGA
CCGCAGAGTCAAAACGCCGAAAGGATTTTTGACGGCATTCAACTGCACAG
GGCGCCGCCAGGAGAGGGAGGGGATCAGTCAGATGGTGGCTGTGATAAGC
GTGCCAACAAGGTTGTCGTCGATAGCAGCGCAGAGCTACTAGTGGGGCAG
GATCCGGATTCGGACCCTTCTGCTGTGCAGCAGCAAGCACGTCGCCAGTG
CTGGGGCGATGATAATATTGGTGGTGAAAGGGCCGCTGTGGCTGCTGCTT
CTACGGCTGCGCCAGAGGACGACATAGCGGATCTAGCGAGAATCGTGTTC
AACCCGCCGTGTTCCCTGGAAGGACTTATACGTATTCTTGAGGCCAACAA
GATCAACGAACAACCGACAATCTCCTGCGCTGCCTTGGGAGCACGTTTAG
TCCAACTGCGCCGCGGGCTCGGAAAAGCGAGGGCTAAGCAGTTGGCCTTG
GCAGCATGCCGCTTCCCTGATAAGCAGGTGGGGTTATACATCGTCTAA
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