Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 420 |
| Model size | 449 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927570.0804217-CDS-E-siliculosus-1a_F_contig1069:17610..18030 | 1622927570.0804217-CDS-E-siliculosus-1a_F_contig1069:17610..18030 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 17611..18030 + |
| 1696318590.6365519-CDS-E-siliculosus-1a_F_contig1069:17610..18030 | 1696318590.6365519-CDS-E-siliculosus-1a_F_contig1069:17610..18030 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 17611..18030 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927570.1179132-UTR-E-siliculosus-1a_F_contig1069:18030..18057 | 1622927570.1179132-UTR-E-siliculosus-1a_F_contig1069:18030..18057 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1069 18031..18057 + |
| 1696318590.6460588-UTR-E-siliculosus-1a_F_contig1069:18030..18057 | 1696318590.6460588-UTR-E-siliculosus-1a_F_contig1069:18030..18057 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1069 18031..18057 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1069.490.1 >prot_E-siliculosus-1a_F_contig1069.490.1 ID=prot_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
HLPAVEHPLRRVLRRDGPPAVAAATAEPATPVNDAAPRGQPPALAPTNVA
LLAAAGAAARAGHCLTQARPRQQRHLHHECLAGESPECLVRQACLVLLLW
AKTMRHRQRRLRLSCQQTPQTCPSPPAQVPHGHEKARQP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1069.490.1 ID=mRNA_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCCAGCTGTTGAACACCCCCTCCGCCGGGTTCTAAGGCGAGACGG
TCCTCCCGCTGTCGCTGCTGCCACTGCCGAGCCTGCAACTCCTGTGAACG
ACGCTGCGCCAAGAGGACAGCCTCCTGCCCTTGCGCCCACGAACGTGGCC
CTCCTTGCGGCGGCTGGTGCTGCTGCCCGAGCTGGACATTGCTTGACTCA
GGCCCGACCCCGACAACAACGCCACCTCCACCACGAGTGCCTAGCGGGGG
AAAGTCCAGAGTGTCTCGTGCGACAAGCATGCCTTGTCCTCCTGCTCTGG
GCGAAGACGATGCGACACCGCCAACGCCGCCTGCGCTTGTCCTGCCAGCA
GACCCCTCAAACATGCCCATCGCCCCCAGCCCAAGTCCCGCATGGGCACG
AGAAAGCCCGTCAGCCATAACCCGTTGTCGGCCCGAAGCACCAAGCT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ >mRNA_E-siliculosus-1a_F_contig1069.490.1 ID=mRNA_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCCAGCTGTTGAACACCCCCTCCGCCGGGTTCTAAGGCGAGACGG
TCCTCCCGCTGTCGCTGCTGCCACTGCCGAGCCTGCAACTCCTGTGAACG
ACGCTGCGCCAAGAGGACAGCCTCCTGCCCTTGCGCCCACGAACGTGGCC
CTCCTTGCGGCGGCTGGTGCTGCTGCCCGAGCTGGACATTGCTTGACTCA
GGCCCGACCCCGACAACAACGCCACCTCCACCACGAGTGCCTAGCGGGGG
AAAGTCCAGAGTGTCTCGTGCGACAAGCATGCCTTGTCCTCCTGCTCTGG
GCGAAGACGATGCGACACCGCCAACGCCGCCTGCGCTTGTCCTGCCAGCA
GACCCCTCAAACATGCCCATCGCCCCCAGCCCAAGTCCCGCATGGGCACG
AGAAAGCCCGTCAGCCATAACACCTCCCAGCTGTTGAACACCCCCTCCGC
CGGGTTCTAAGGCGAGACGGTCCTCCCGCTGTCGCTGCTGCCACTGCCGA
GCCTGCAACTCCTGTGAACGACGCTGCGCCAAGAGGACAGCCTCCTGCCC
TTGCGCCCACGAACGTGGCCCTCCTTGCGGCGGCTGGTGCTGCTGCCCGA
GCTGGACATTGCTTGACTCAGGCCCGACCCCGACAACAACGCCACCTCCA
CCACGAGTGCCTAGCGGGGGAAAGTCCAGAGTGTCTCGTGCGACAAGCAT
GCCTTGTCCTCCTGCTCTGGGCGAAGACGATGCGACACCGCCAACGCCGC
CTGCGCTTGTCCTGCCAGCAGACCCCTCAAACATGCCCATCGCCCCCAGC
CCAAGTCCCGCATGGGCACGAGAAAGCCCGTCAGCCATAA back to top
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