mRNA_E-siliculosus-1a_F_contig1069.490.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1069.490.1
Unique NamemRNA_E-siliculosus-1a_F_contig1069.490.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1069contigE-siliculosus-1a_F_contig1069:17611..18057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size420
Model size449
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.0804217-CDS-E-siliculosus-1a_F_contig1069:17610..180301622927570.0804217-CDS-E-siliculosus-1a_F_contig1069:17610..18030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 17611..18030 +
1696318590.6365519-CDS-E-siliculosus-1a_F_contig1069:17610..180301696318590.6365519-CDS-E-siliculosus-1a_F_contig1069:17610..18030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 17611..18030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.1179132-UTR-E-siliculosus-1a_F_contig1069:18030..180571622927570.1179132-UTR-E-siliculosus-1a_F_contig1069:18030..18057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1069 18031..18057 +
1696318590.6460588-UTR-E-siliculosus-1a_F_contig1069:18030..180571696318590.6460588-UTR-E-siliculosus-1a_F_contig1069:18030..18057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1069 18031..18057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1069.490.1prot_E-siliculosus-1a_F_contig1069.490.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1069 17611..18030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1069.490.1

>prot_E-siliculosus-1a_F_contig1069.490.1 ID=prot_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
HLPAVEHPLRRVLRRDGPPAVAAATAEPATPVNDAAPRGQPPALAPTNVA
LLAAAGAAARAGHCLTQARPRQQRHLHHECLAGESPECLVRQACLVLLLW
AKTMRHRQRRLRLSCQQTPQTCPSPPAQVPHGHEKARQP*
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mRNA from alignment at E-siliculosus-1a_F_contig1069:17611..18057+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1069.490.1 ID=mRNA_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCCAGCTGTTGAACACCCCCTCCGCCGGGTTCTAAGGCGAGACGG
TCCTCCCGCTGTCGCTGCTGCCACTGCCGAGCCTGCAACTCCTGTGAACG
ACGCTGCGCCAAGAGGACAGCCTCCTGCCCTTGCGCCCACGAACGTGGCC
CTCCTTGCGGCGGCTGGTGCTGCTGCCCGAGCTGGACATTGCTTGACTCA
GGCCCGACCCCGACAACAACGCCACCTCCACCACGAGTGCCTAGCGGGGG
AAAGTCCAGAGTGTCTCGTGCGACAAGCATGCCTTGTCCTCCTGCTCTGG
GCGAAGACGATGCGACACCGCCAACGCCGCCTGCGCTTGTCCTGCCAGCA
GACCCCTCAAACATGCCCATCGCCCCCAGCCCAAGTCCCGCATGGGCACG
AGAAAGCCCGTCAGCCATAACCCGTTGTCGGCCCGAAGCACCAAGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:17611..18057+

>mRNA_E-siliculosus-1a_F_contig1069.490.1 ID=mRNA_E-siliculosus-1a_F_contig1069.490.1|Name=mRNA_E-siliculosus-1a_F_contig1069.490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:17611..18057+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTCCCAGCTGTTGAACACCCCCTCCGCCGGGTTCTAAGGCGAGACGG
TCCTCCCGCTGTCGCTGCTGCCACTGCCGAGCCTGCAACTCCTGTGAACG
ACGCTGCGCCAAGAGGACAGCCTCCTGCCCTTGCGCCCACGAACGTGGCC
CTCCTTGCGGCGGCTGGTGCTGCTGCCCGAGCTGGACATTGCTTGACTCA
GGCCCGACCCCGACAACAACGCCACCTCCACCACGAGTGCCTAGCGGGGG
AAAGTCCAGAGTGTCTCGTGCGACAAGCATGCCTTGTCCTCCTGCTCTGG
GCGAAGACGATGCGACACCGCCAACGCCGCCTGCGCTTGTCCTGCCAGCA
GACCCCTCAAACATGCCCATCGCCCCCAGCCCAAGTCCCGCATGGGCACG
AGAAAGCCCGTCAGCCATAACACCTCCCAGCTGTTGAACACCCCCTCCGC
CGGGTTCTAAGGCGAGACGGTCCTCCCGCTGTCGCTGCTGCCACTGCCGA
GCCTGCAACTCCTGTGAACGACGCTGCGCCAAGAGGACAGCCTCCTGCCC
TTGCGCCCACGAACGTGGCCCTCCTTGCGGCGGCTGGTGCTGCTGCCCGA
GCTGGACATTGCTTGACTCAGGCCCGACCCCGACAACAACGCCACCTCCA
CCACGAGTGCCTAGCGGGGGAAAGTCCAGAGTGTCTCGTGCGACAAGCAT
GCCTTGTCCTCCTGCTCTGGGCGAAGACGATGCGACACCGCCAACGCCGC
CTGCGCTTGTCCTGCCAGCAGACCCCTCAAACATGCCCATCGCCCCCAGC
CCAAGTCCCGCATGGGCACGAGAAAGCCCGTCAGCCATAA
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