mRNA_E-siliculosus-1a_F_contig10680.484.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10680.484.1
Unique NamemRNA_E-siliculosus-1a_F_contig10680.484.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.300e-37
Identity = 72/87 (82.76%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*------------PRTSVVISSEPLCRSTKSWELVPRNSMVIVEG 225
            AAPAMSLNFCVTDGRHIVCSRYRSHARQ+PPSLFVLAGAG A             PRTSVVISSEPLCRSTKSWELVPRNSMVIVEG
Sbjct:  231 AAPAMSLNFCVTDGRHIVCSRYRSHARQNPPSLFVLAGAGFACDEAGCLRQTATEPRTSVVISSEPLCRSTKSWELVPRNSMVIVEG 317          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.710e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA 126
            AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA
Sbjct:  237 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA 278          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A835ZAJ1_9STRA (Nucleophile aminohydrolase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.750e-12
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   10 AMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS------------VVISSEPLC-RSTKSWELVPRNSMVI 216
            A SLN  VT+G H+V SRYR+   + PPSL++  G+GLA    +            VVISSEPLC RS + W +VP+N+MV+
Sbjct:  206 ASSLNMAVTNGLHVVVSRYRNSPTEQPPSLYMSHGSGLAVGDDNCLRFARPHGVGGVVISSEPLCSRSLERWSIVPKNTMVV 287          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: UPI0019B45B5D (Class II glutamine amidotransferase n=1 Tax=bacterium TaxID=1869227 RepID=UPI0019B45B5D)

HSP 1 Score: 54.7 bits (130), Expect = 5.970e-7
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*P--RT----------SVVISSEPLCRSTKSWELVPRNSMVIVE 222
            LNFCV++GR IV +RY ++ R  P SL+ + G        RT          +VVISSEP       W  V RNSM+IV+
Sbjct:  196 LNFCVSNGRSIVATRYTTNPRVQPASLYYMFGRDYVAEGERTYMTPDEGQSEAVVISSEPFTSHKSEWIKVTRNSMIIVD 275          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A316V2F2_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316V2F2_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 4.390e-6
Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS-------------VVISSEPLCRSTKSWELVPRNSMVIV 219
            +NFCVTDG+ IVC+RY S    +  SL+  +G                      VV++SEPL      W  VP N+M+IV
Sbjct:  267 MNFCVTDGQSIVCTRYVSSLHDEAASLYFSSGTSFYEREKGRFRMRKEDRRQNIVVVASEPLTFEKADWMEVPTNTMIIV 346          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A316U354_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U354_9BASI)

HSP 1 Score: 50.4 bits (119), Expect = 2.090e-5
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGA-------GLA*PRTS------VVISSEPLCRSTKSWELVPRNSMVIV 219
            +NFCVTDG  I+C+RY S    +  SL+  +G        G+   R        VV++SEPL      W  VP N+M+I+
Sbjct:  233 MNFCVTDGLSILCTRYVSSLHDEAASLYFSSGTSFYEREKGMFRMRKEDRRQNIVVVASEPLTFQKADWMEVPTNTMIII 312          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A1Y1YQA9_9FUNG (N-terminal nucleophile aminohydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQA9_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 2.720e-5
Identity = 25/80 (31.25%), Postives = 41/80 (51.25%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS-------------VVISSEPLCRSTKSWELVPRNSMVIV 219
            +NF VTDG+ ++C+RY S A Q+  SL+  +G      +               VV++SEPL      W  +P N++V++
Sbjct:  199 MNFAVTDGKTVICTRYISSATQEAASLYFSSGTRFESYKPGHYRMIKADKREDIVVVASEPLTFEQADWITIPTNTLVVI 278          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A0M8MKW3_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MKW3_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5
Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGL------------A*PRTSVV-ISSEPLCRSTKSWELVPRNSMVIV 219
            LNFCVTDG+ +VC+RY S    +  SLF   G               A  R  +V I+SEPL      W  +P N++V +
Sbjct:  217 LNFCVTDGKSVVCTRYVSSKTDEAASLFFSTGTSFYEHSKGEYRMVKAGRRQKIVMIASEPLTFEQADWMEIPSNTLVCI 296          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A0C9T6T1_PLICR (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Plicaturopsis crispa FD-325 SS-3 TaxID=944288 RepID=A0A0C9T6T1_PLICR)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   10 AMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTSVVISSE 159
            A SLN C TDG  +V  RYR+HA + PPSL+V   AG+   R  V + ++
Sbjct:  251 ANSLNLCTTDGEQMVAVRYRNHATEQPPSLYVSTRAGVVLNRKFVNVEND 300          
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A2T9ZL54_9FUNG (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZL54_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 3.670e-5
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGA--------GLA*PRT-----SVVISSEPLCRSTKSWELVPRNSMVIV 219
            LNF VTDG  +VC+RY S    +  SLF  +G+        G    R      SVVI+SEPL      W ++P N++++V
Sbjct:  199 LNFAVTDGDTVVCTRYISSCTLEAASLFFSSGSEFKSEIGGGYRMIRANKRDKSVVIASEPLTFERNDWLIIPTNTLLVV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXW2_9PHAE1.300e-3782.76Glutamine amidotransferase type-2 domain-containin... [more]
D8LKF2_ECTSI1.710e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAJ1_9STRA2.750e-1246.34Nucleophile aminohydrolase (Fragment) n=1 Tax=Trib... [more]
UPI0019B45B5D5.970e-741.25Class II glutamine amidotransferase n=1 Tax=bacter... [more]
A0A316V2F2_9BASI4.390e-636.25N-terminal nucleophile aminohydrolase n=1 Tax=Jami... [more]
A0A316U354_9BASI2.090e-536.25N-terminal nucleophile aminohydrolase n=1 Tax=Pseu... [more]
A0A1Y1YQA9_9FUNG2.720e-531.25N-terminal nucleophile aminohydrolase n=1 Tax=Basi... [more]
A0A0M8MKW3_9BASI2.800e-536.25N-terminal nucleophile aminohydrolase n=1 Tax=Mala... [more]
A0A0C9T6T1_PLICR2.800e-546.00Glutamine amidotransferase type-2 domain-containin... [more]
A0A2T9ZL54_9FUNG3.670e-537.50Glutamine amidotransferase type-2 domain-containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10680contigE-siliculosus-1a_F_contig10680:1669..2329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size117
Model size225
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko01000,ko01002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.M
EC5.4.2.3
EggNOG OGsCOG0449@1,KOG1268@2759
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
KEGG ReactionR08193
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG rclassRC00408
Preferred nameDUG3
Seed eggNOG ortholog2880.D8LKF2
Seed ortholog evalue1.7e-14
Seed ortholog score84.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10680.484.1prot_E-siliculosus-1a_F_contig10680.484.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10680 1765..2317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.904146-UTR-E-siliculosus-1a_F_contig10680:1668..17641622927569.904146-UTR-E-siliculosus-1a_F_contig10680:1668..1764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10680 1669..1764 -
1696318590.5536902-UTR-E-siliculosus-1a_F_contig10680:1668..17641696318590.5536902-UTR-E-siliculosus-1a_F_contig10680:1668..1764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10680 1669..1764 -
1622927569.9373477-UTR-E-siliculosus-1a_F_contig10680:2317..23291622927569.9373477-UTR-E-siliculosus-1a_F_contig10680:2317..2329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10680 2318..2329 -
1696318590.5862606-UTR-E-siliculosus-1a_F_contig10680:2317..23291696318590.5862606-UTR-E-siliculosus-1a_F_contig10680:2317..2329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10680 2318..2329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.9162128-CDS-E-siliculosus-1a_F_contig10680:1764..17661622927569.9162128-CDS-E-siliculosus-1a_F_contig10680:1764..1766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10680 1765..1766 -
1696318590.567002-CDS-E-siliculosus-1a_F_contig10680:1764..17661696318590.567002-CDS-E-siliculosus-1a_F_contig10680:1764..1766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10680 1765..1766 -
1622927569.9257343-CDS-E-siliculosus-1a_F_contig10680:2202..23171622927569.9257343-CDS-E-siliculosus-1a_F_contig10680:2202..2317Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10680 2203..2317 -
1696318590.5766523-CDS-E-siliculosus-1a_F_contig10680:2202..23171696318590.5766523-CDS-E-siliculosus-1a_F_contig10680:2202..2317Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10680 2203..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10680.484.1

>prot_E-siliculosus-1a_F_contig10680.484.1 ID=prot_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp
MSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*
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mRNA from alignment at E-siliculosus-1a_F_contig10680:1669..2329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10680.484.1 ID=mRNA_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=661bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10680:1669..2329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGCACCGGCCATGTCCCTGAACTTCTGTGTGACGGACGGGAGGCACAT CGTTTGCTCGCGGTATCGCAGCCACGCCCGGCAGGATCCTCCGAGCTTGT TCGTTCTTGCGGGGGCAGGGCTTGCATGTGACGAGGCGGGGTGCTTGCGG CTGACCGCCCCTGGTGAGACAAGGGCGCCAAATTCATTGTTCGGTTTGTT TCATGTTGCATCCGTTCTGTCTGGAGGTTACAGTCGAAGACGGGGGGGGG GGGTCTACAATGAACATGTGCGTAGCAATGGACTGTCTCGGCCACCCGCA TTTTTGGGGTATCGAGTGAACGTTGAGTGCACAGCCTCCCTTAGGTCTAG ATGCACACGTGCGCAACGAGTTGGTGATCGTCGATGTTTCGCTGCAGAAG CAAGGCCCGCTATCAGGCGATCAACAGTTGAATTCCTCAACAGTCTCAGT CAACTCCTATCCTGTCCGTCGTTCTGCCTTCGCCACCCTGTCCGCGAAAC CGCGCCTTCACATGCACCTGCGGCGCCAAAATGTGTGCATTGGGTCGGAT TGCGTTGTTGAAGAACCTCGCACAAGCGTGGTGATTTCGTCGGAACCTCT CTGCCGCTCCACCAAGAGCTGGGAGCTGGTGCCGCGCAACAGCATGGTGA TCGTGGAAGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10680:1669..2329-

>mRNA_E-siliculosus-1a_F_contig10680.484.1 ID=mRNA_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10680:1669..2329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCCTGAACTTCTGTGTGACGGACGGGAGGCACATCGTTTGCTCGCG
GTATCGCAGCCACGCCCGGCAGGATCCTCCGAGCTTGTTCGTTCTTGCGG
GGGCAGGGCTTGCATATGTCCCTGAACTTCTGTGTGACGGACGGGAGGCA
CATCGTTTGCTCGCGGTATCGCAGCCACGCCCGGCAGGATCCTCCGAGCT
TGTTCGTTCTTGCGGGGGCAGGGCTTGCATAAAA
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