mRNA_E-siliculosus-1a_F_contig10670.481.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10670.481.1
Unique NamemRNA_E-siliculosus-1a_F_contig10670.481.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 9.120e-100
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 1 
Query:   28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPFSALSGIPGIRQLSRDKYKGSFLMLKQAGMGGAKLRSMVHTRRVHKWAGACFPDD 462
            VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLN R NQTALALQCKFSNECDTVLFHGWGNGTGLVGNCY+REIDPFSA SGIPGIRQLSRDKYKGSFLMLKQ+GMGGAKLRSMVHTRRVHKWAGACFPDD
Sbjct:   26 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNARTNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRDKYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDD 170
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BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.890e-36
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:   28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPFSALSGI 318
            V YQP+G R E+ Q+MYLRFR G  V+GVG+EE RK CKI+GKYK N   NQ A+ + C+FSN+ DTV+FHG GNGTGLVGNCY+RE+D FS+ S I
Sbjct:   99 VTYQPSGGRHEIVQHMYLRFREGA-VYGVGFEEGRKACKISGKYKRNEGANQMAVVMTCRFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFSSFSQI 194
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BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: D8LAZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.480e-13
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFS 213
            V YQP+G R EV Q+MYLRFR G  V+GVG+EE RK CKI+GKYK N   NQ A+ + C+ S
Sbjct:   42 VTYQPSGGRYEVVQHMYLRFREGA-VYGVGFEEGRKACKISGKYKRNEGANQVAVVMTCRSS 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN65_ECTSI9.120e-10096.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY23_9PHAE1.890e-3663.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAZ0_ECTSI1.480e-1359.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10670contigE-siliculosus-1a_F_contig10670:139..1976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size462
Model size462
Exons3
Ec32 orthologEc-05_003680.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10670.481.1prot_E-siliculosus-1a_F_contig10670.481.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10670 139..1976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.2075338-CDS-E-siliculosus-1a_F_contig10670:138..3441622927569.2075338-CDS-E-siliculosus-1a_F_contig10670:138..344Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 139..344 +
1696318590.0459332-CDS-E-siliculosus-1a_F_contig10670:138..3441696318590.0459332-CDS-E-siliculosus-1a_F_contig10670:138..344Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 139..344 +
1622927569.219134-CDS-E-siliculosus-1a_F_contig10670:1207..13121622927569.219134-CDS-E-siliculosus-1a_F_contig10670:1207..1312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 1208..1312 +
1696318590.057093-CDS-E-siliculosus-1a_F_contig10670:1207..13121696318590.057093-CDS-E-siliculosus-1a_F_contig10670:1207..1312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 1208..1312 +
1622927569.2290466-CDS-E-siliculosus-1a_F_contig10670:1825..19761622927569.2290466-CDS-E-siliculosus-1a_F_contig10670:1825..1976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 1826..1976 +
1696318590.0656555-CDS-E-siliculosus-1a_F_contig10670:1825..19761696318590.0656555-CDS-E-siliculosus-1a_F_contig10670:1825..1976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10670 1826..1976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10670.481.1

>prot_E-siliculosus-1a_F_contig10670.481.1 ID=prot_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=154bp
PRSRSETQTVKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKIT
GKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPF
SALSGIPGIRQLSRDKYKGSFLMLKQAGMGGAKLRSMVHTRRVHKWAGAC
FPDD
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mRNA from alignment at E-siliculosus-1a_F_contig10670:139..1976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10670.481.1 ID=mRNA_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1838bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10670:139..1976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAACGGTGA
GCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGGGGGGAA
ACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAGATTACG
GGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGCCCTCCA
GTGCAAGTGAGTTTTTTGTTGTGTTTTGTTGTTCCGATTTTGTTTGGTCT
TCCTGGTTCAAATGTTTGTTTATGCTAAATGTTATTGTTGCTGGTTACAT
ATCTTCCGCTTTTTCCACTCAAGGCAGGCACTTTTTTTTTTTTTGTGGCG
TTCATCATGGCGGTCTAATATCCGCTCTGGACTGGAAGGGGGGAGTGTTT
TTTTGTTTTCTTTTGCGGCTTTTCTCGTGGAAATGTGGGTCGCGGTGTGT
GACGATCAATACGTGTTGCTTCGCTAGTCAGCTGCAGGGAACCAAGCTTG
CAGCAGCCTATTTGCAGGATCTCAAGGAAGAAACAGACGGATCAAGAATG
AAAAACCGAGCGTGATGACAACATCGTGCTCATTGGCGAGTTTTTGCGGT
CGTTTATCTCCCCCATGCCTTCTTGCTCTTTCCCCCCGTAATCGTCTCTC
GGTCAGCACCTCCGTGTCCCTCTCCCTCTCTGTGCTGTGTTGTTCCCTGC
CTGTTCCCCCCCCTCGCTGGCGCCCTCCGTGACCAAAACCTTCCGCTGAA
CGTCCCCCCATGCCTGTACGGGTTTATTCACCCCCTTCTTGTCGTTATGT
TCGAACACGTCCGTTTTCGGACGCCCCCCATGTCTTTACGGGCTTATCCA
CCCCCTTATTCTCAATATATAGGTTGGAACACGTGCGTTTTCGAACGTCC
CCCATGTCTTCACGGTCGTTTCCACCTCCTTGTCCTTAGTATGTACGAAC
ACGTCCTTTTTCGAACGTCCCCCATGTCTTTACGGTCTTATCCACCTCCA
CCTCATATGTTGTGTACGAACGCGTGCGTTCCTTCTTCTTGTTTGTGTGT
GACGTGTGACATGGTGCAGGTTTTCCAACGAGTGCGATACCGTCTTGTTC
CACGGCTGGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGA
GATCGACCCGTTCTCCGCCTTGTCGTGAGTGTTTGGTTGCACTTGTTGTC
GTTGTTGTCGTCGTTGTTGTTGTTCAGTTGTTCAGTTGTTGCAGTTATTG
CTGTCATTGTTGTTGTGCTTTTGACGCACCCGCCCGACGTGAAACGGTAA
CGTTTGGTCAGCCGGGATGCCCATCACCGCATGGCATATATCTGGTTTGG
CATAGCAAACCCCATACCGGAGTGGGCTCACATGCGAGCCCAGGGTCGTC
AATGGGGGGTCACGCAAGGTGGAAATGAAATCATGCAGCAGGATGAGCCC
ACAGCTGGCATCGGCTACTACACAGCAGTCGTGGCGTTTCCTAAGCCCAA
CAGCTCCCGCAGCTGATGCGCTTTGGCTCGGAAGAGCCTAGCGAACCTCA
ACGAACAGAGCAATGAAAGTCTGTGTACAGAGTGAAACGGCGGTGGCCCC
GATCACTGATTTCATTGGTCAAGACAGACTACGGCGAGCAACAAGCGACC
CCCTCCCCCCCCCTGGTTTGTCTGTTTTTGTTTGCAGGGGAATACCGGGC
ATACGACAGCTCAGCCGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAA
GCAGGCAGGGATGGGGGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGA
GGGTGCACAAGTGGGCGGGGGCCTGCTTCCCGGATGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10670:139..1976+

>mRNA_E-siliculosus-1a_F_contig10670.481.1 ID=mRNA_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10670:139..1976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAACGGTGA
GCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGGGGGGAA
ACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAGATTACG
GGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGCCCTCCA
GTGCAACCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAA
CGGTGAGCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGG
GGGGAAACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAG
ATTACGGGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGC
CCTCCAGTGCAAGTTTTCCAACGAGTGCGATACCGTCTTGTTCCACGGCT
GGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGAGATCGAC
CCGTTCTCCGCCTTGTCGTTTTCCAACGAGTGCGATACCGTCTTGTTCCA
CGGCTGGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGAGA
TCGACCCGTTCTCCGCCTTGTCGGGAATACCGGGCATACGACAGCTCAGC
CGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAAGCAGGCAGGGATGGG
GGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGAGGGTGCACAAGTGGG
CGGGGGCCTGCTTCCCGGATGACGGGAATACCGGGCATACGACAGCTCAG
CCGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAAGCAGGCAGGGATGG
GGGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGAGGGTGCACAAGTGG
GCGGGGGCCTGCTTCCCGGATGAC
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