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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI) HSP 1 Score: 301 bits (770), Expect = 9.120e-100 Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 1 Query: 28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPFSALSGIPGIRQLSRDKYKGSFLMLKQAGMGGAKLRSMVHTRRVHKWAGACFPDD 462
VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLN R NQTALALQCKFSNECDTVLFHGWGNGTGLVGNCY+REIDPFSA SGIPGIRQLSRDKYKGSFLMLKQ+GMGGAKLRSMVHTRRVHKWAGACFPDD
Sbjct: 26 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNARTNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRDKYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDD 170
BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.890e-36 Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 1 Query: 28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPFSALSGI 318
V YQP+G R E+ Q+MYLRFR G V+GVG+EE RK CKI+GKYK N NQ A+ + C+FSN+ DTV+FHG GNGTGLVGNCY+RE+D FS+ S I
Sbjct: 99 VTYQPSGGRHEIVQHMYLRFREGA-VYGVGFEEGRKACKISGKYKRNEGANQMAVVMTCRFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFSSFSQI 194
BLAST of mRNA_E-siliculosus-1a_F_contig10670.481.1 vs. uniprot
Match: D8LAZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ0_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.480e-13 Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 28 VKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKITGKYKLNTRMNQTALALQCKFS 213
V YQP+G R EV Q+MYLRFR G V+GVG+EE RK CKI+GKYK N NQ A+ + C+ S
Sbjct: 42 VTYQPSGGRYEVVQHMYLRFREGA-VYGVGFEEGRKACKISGKYKRNEGANQVAVVMTCRSS 102
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 0 |
Stop | 0 |
Cds size | 462 |
Model size | 462 |
Exons | 3 |
Ec32 ortholog | Ec-05_003680.1 |
Ec32 ortholog description | expressed unknown protein |
Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10670.481.1 >prot_E-siliculosus-1a_F_contig10670.481.1 ID=prot_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=154bp
PRSRSETQTVKYQPNGERSEVTQYMYLRFRRGGNVHGVGYEESRKLCKIT GKYKLNTRMNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYVREIDPF SALSGIPGIRQLSRDKYKGSFLMLKQAGMGGAKLRSMVHTRRVHKWAGAC FPDD back to topmRNA from alignment at E-siliculosus-1a_F_contig10670:139..1976+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10670.481.1 ID=mRNA_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1838bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10670:139..1976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAACGGTGA
GCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGGGGGGAA
ACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAGATTACG
GGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGCCCTCCA
GTGCAAGTGAGTTTTTTGTTGTGTTTTGTTGTTCCGATTTTGTTTGGTCT
TCCTGGTTCAAATGTTTGTTTATGCTAAATGTTATTGTTGCTGGTTACAT
ATCTTCCGCTTTTTCCACTCAAGGCAGGCACTTTTTTTTTTTTTGTGGCG
TTCATCATGGCGGTCTAATATCCGCTCTGGACTGGAAGGGGGGAGTGTTT
TTTTGTTTTCTTTTGCGGCTTTTCTCGTGGAAATGTGGGTCGCGGTGTGT
GACGATCAATACGTGTTGCTTCGCTAGTCAGCTGCAGGGAACCAAGCTTG
CAGCAGCCTATTTGCAGGATCTCAAGGAAGAAACAGACGGATCAAGAATG
AAAAACCGAGCGTGATGACAACATCGTGCTCATTGGCGAGTTTTTGCGGT
CGTTTATCTCCCCCATGCCTTCTTGCTCTTTCCCCCCGTAATCGTCTCTC
GGTCAGCACCTCCGTGTCCCTCTCCCTCTCTGTGCTGTGTTGTTCCCTGC
CTGTTCCCCCCCCTCGCTGGCGCCCTCCGTGACCAAAACCTTCCGCTGAA
CGTCCCCCCATGCCTGTACGGGTTTATTCACCCCCTTCTTGTCGTTATGT
TCGAACACGTCCGTTTTCGGACGCCCCCCATGTCTTTACGGGCTTATCCA
CCCCCTTATTCTCAATATATAGGTTGGAACACGTGCGTTTTCGAACGTCC
CCCATGTCTTCACGGTCGTTTCCACCTCCTTGTCCTTAGTATGTACGAAC
ACGTCCTTTTTCGAACGTCCCCCATGTCTTTACGGTCTTATCCACCTCCA
CCTCATATGTTGTGTACGAACGCGTGCGTTCCTTCTTCTTGTTTGTGTGT
GACGTGTGACATGGTGCAGGTTTTCCAACGAGTGCGATACCGTCTTGTTC
CACGGCTGGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGA
GATCGACCCGTTCTCCGCCTTGTCGTGAGTGTTTGGTTGCACTTGTTGTC
GTTGTTGTCGTCGTTGTTGTTGTTCAGTTGTTCAGTTGTTGCAGTTATTG
CTGTCATTGTTGTTGTGCTTTTGACGCACCCGCCCGACGTGAAACGGTAA
CGTTTGGTCAGCCGGGATGCCCATCACCGCATGGCATATATCTGGTTTGG
CATAGCAAACCCCATACCGGAGTGGGCTCACATGCGAGCCCAGGGTCGTC
AATGGGGGGTCACGCAAGGTGGAAATGAAATCATGCAGCAGGATGAGCCC
ACAGCTGGCATCGGCTACTACACAGCAGTCGTGGCGTTTCCTAAGCCCAA
CAGCTCCCGCAGCTGATGCGCTTTGGCTCGGAAGAGCCTAGCGAACCTCA
ACGAACAGAGCAATGAAAGTCTGTGTACAGAGTGAAACGGCGGTGGCCCC
GATCACTGATTTCATTGGTCAAGACAGACTACGGCGAGCAACAAGCGACC
CCCTCCCCCCCCCTGGTTTGTCTGTTTTTGTTTGCAGGGGAATACCGGGC
ATACGACAGCTCAGCCGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAA
GCAGGCAGGGATGGGGGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGA
GGGTGCACAAGTGGGCGGGGGCCTGCTTCCCGGATGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10670:139..1976+ >mRNA_E-siliculosus-1a_F_contig10670.481.1 ID=mRNA_E-siliculosus-1a_F_contig10670.481.1|Name=mRNA_E-siliculosus-1a_F_contig10670.481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10670:139..1976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAACGGTGA GCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGGGGGGAA ACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAGATTACG GGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGCCCTCCA GTGCAACCCCGGTCGCGATCCGAAACCCAAACAGTCAAGTATCAACCTAA CGGTGAGCGGAGCGAGGTGACGCAGTACATGTACCTGCGCTTCCGGCGGG GGGGAAACGTCCATGGTGTGGGATACGAGGAGTCCAGGAAGCTGTGCAAG ATTACGGGCAAGTACAAGTTGAACACTCGGATGAACCAGACGGCGCTAGC CCTCCAGTGCAAGTTTTCCAACGAGTGCGATACCGTCTTGTTCCACGGCT GGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGAGATCGAC CCGTTCTCCGCCTTGTCGTTTTCCAACGAGTGCGATACCGTCTTGTTCCA CGGCTGGGGGAACGGCACGGGGCTGGTCGGAAACTGCTACGTCCGAGAGA TCGACCCGTTCTCCGCCTTGTCGGGAATACCGGGCATACGACAGCTCAGC CGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAAGCAGGCAGGGATGGG GGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGAGGGTGCACAAGTGGG CGGGGGCCTGCTTCCCGGATGACGGGAATACCGGGCATACGACAGCTCAG CCGTGACAAGTACAAGGGCTCGTTCCTGATGCTCAAGCAGGCAGGGATGG GGGGGGCGAAGCTGAGGTCCATGGTCCACACGAGGAGGGTGCACAAGTGG GCGGGGGCCTGCTTCCCGGATGAC back to top
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