mRNA_E-siliculosus-1a_F_contig10.47.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI) HSP 1 Score: 268 bits (686), Expect = 7.460e-85 Identity = 194/226 (85.84%), Postives = 196/226 (86.73%), Query Frame = 1 Query: 274 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKAGAFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHGVHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREGVWDKGQLTGQATVQYKNGDRYTGGFERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 951
RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK+GAFHGQGEYHFA+SGDVYVXXXXXXXXXXXXXXXXXXXXXXXXX LWCDLRHGHGVHSGPDST XXXXXXXXXXXKLSDKDGNVFEGFFRE ERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY
Sbjct: 134 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359
BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.330e-23 Identity = 67/152 (44.08%), Postives = 72/152 (47.37%), Query Frame = 1 Query: 331 VAATGGENEWYDGQWKAGAFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHG--VHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREGVWDKGQLTGQATVQYKNGDRYTGGFERGRRSGEGTMFAA 780
AATGGENEWYD QWKAGA HGQG FA SGD+ V + HG G VH G + GVWD GQL+GQAT QY G+RYTGGFERGRRSGEGTMFAA
Sbjct: 41 AAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCVGSWVG------------------------NQMHGKGKIVHGGEGGEDEGTHNTSVNCVGSR---------------GVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAA 153 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.47.1 >prot_E-siliculosus-1a_F_contig10.47.1 ID=prot_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=314bp MWKNGMRHGTGALTFTNGSTYSGSWDKDARRGQDGKACGAGTQTFGNGDRback to top mRNA from alignment at E-siliculosus-1a_F_contig10:124932..128989+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.47.1 ID=mRNA_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4058bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124932..128989+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:124932..128989+ >mRNA_E-siliculosus-1a_F_contig10.47.1 ID=mRNA_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124932..128989+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |