mRNA_E-siliculosus-1a_F_contig10.47.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig10.47.1
Unique Name	mRNA_E-siliculosus-1a_F_contig10.47.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 7.460e-85
Identity = 194/226 (85.84%), Postives = 196/226 (86.73%), Query Frame = 1

Query:  274 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKAGAFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHGVHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREGVWDKGQLTGQATVQYKNGDRYTGGFERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 951
            RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWK+GAFHGQGEYHFA+SGDVYVXXXXXXXXXXXXXXXXXXXXXXXXX LWCDLRHGHGVHSGPDST   XXXXXXXXXXXKLSDKDGNVFEGFFRE                          ERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY
Sbjct:  134 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.330e-23
Identity = 67/152 (44.08%), Postives = 72/152 (47.37%), Query Frame = 1

Query:  331 VAATGGENEWYDGQWKAGAFHGQGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXDLWCDLRHGHG--VHSGPDSTXXXXXXXXXXXXXXKLSDKDGNVFEGFFREGVWDKGQLTGQATVQYKNGDRYTGGFERGRRSGEGTMFAA 780
             AATGGENEWYD QWKAGA HGQG   FA SGD+ V                             +  HG G  VH G                  +               GVWD GQL+GQAT QY  G+RYTGGFERGRRSGEGTMFAA
Sbjct:   41 AAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCVGSWVG------------------------NQMHGKGKIVHGGEGGEDEGTHNTSVNCVGSR---------------GVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAA 153

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G0U8_ECTSI	7.460e-85	85.84	Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=...	[more]
D7G0U9_ECTSI	1.330e-23	44.08	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig10	contig	E-siliculosus-1a_F_contig10:124932..128989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	942
Model size	954
Exons	8
Ec32 ortholog	Ec-23_002230.1
Ec32 ortholog description	MORN motif
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	T
EggNOG OGs	COG5253@1,KOG0229@2759
EggNOG free text desc.	Translation initiation factor IF-2, N-terminal region
Seed eggNOG ortholog	2880.D7G0U8
Seed ortholog evalue	2.4e-69
Seed ortholog score	269.2
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927503.8994427-UTR-E-siliculosus-1a_F_contig10:124931..124943	1622927503.8994427-UTR-E-siliculosus-1a_F_contig10:124931..124943	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10 124932..124943 +
1696318555.1443102-UTR-E-siliculosus-1a_F_contig10:124931..124943	1696318555.1443102-UTR-E-siliculosus-1a_F_contig10:124931..124943	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10 124932..124943 +

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig10.47.1	prot_E-siliculosus-1a_F_contig10.47.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig10 124944..128989 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10:124932..128989+
coding sequence from alignment at E-siliculosus-1a_F_contig10:124932..128989+

protein sequence of mRNA_E-siliculosus-1a_F_contig10.47.1

>prot_E-siliculosus-1a_F_contig10.47.1 ID=prot_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=314bp
MWKNGMRHGTGALTFTNGSTYSGSWDKDARRGQDGKACGAGTQTFGNGDR
YDGDWKDGMMSGKGTYVSANGDRYEGEWMDDEKNGKGRQTFASGGGGGGR
GDEPEKVAATGGENEWYDGQWKAGAFHGQGEYHFADSGDVYVGSWVGNQM
HGKGKIVYGGDGGEYQGDLWCDLRHGHGVHSGPDSTYDGAWSNDRRHGHG
KLSDKDGNVFEGFFREGVWDKGQLTGQATVQYKNGDRYTGGFERGRRSGE
GTMFAAKTGYEFTGTFEKGLKNGSGRLRLPCGASVEGLWILGNLVGNSKF
SFAPDSEWNDPSY*

mRNA from alignment at E-siliculosus-1a_F_contig10:124932..128989+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10.47.1 ID=mRNA_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4058bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124932..128989+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTTATGAAGGAATGTGGAAGAATGGCATGCGTCATGGCACGGTAAGATG
GGAGAAATGTCCAGCACTCACACGAGTGTGCGTCTCTGCTGTGATGTTAA
CTACACTGACCTTTGCTTCGTAGGTCATCATCTCGTCTCCCTTTGAGTTT
AACGCGATATTCGTGCTGCGGACATGGCTACAGACAGTCAGGGCCAATCG
ACTTCTACTGTAGTCAGGTAGTCCTCGAACGTTGACTGGGCATGCTGCCG
TCAAGACATGCTGGGCCGAAATGAAATCATAACAACAGACACATGCCATT
TCTTCAAAACACGTTCTCTCCGCGGAGCCGCCAGCAAGTATTGCACACGC
TGGCTCTCGGGGTTCAAACAGTTGGTTCCACTCACCGCAGGTGTATCGAG
GTCTTGCGAATGACTTCAATAAAAAGGGAACATTATTCACTTATTTCCAC
TCCATTCGTCTTGGATTGCTGTGGATGATCAACATGTGAGAATGGGCGAT
AAACTGTCATATCCTGTTCAAATGTGATTTCATTCATTCACCTGTGTCTG
GAGCACATTTGTGGCACGCAGTTCGCTGATTGGTAAAAAAACTGCGGCGG
AATTTCGAAAATTCCCAAAAAAACAGACATGACCCAAGATCCTTGTTTGG
CGGATGACGTTATCCACGGTGGAGAGTATACGTCGTGTAGAACCCTTTCC
CGTGAAGTTTTCATTTCCAGTCGAGACATTTCTGGCGACATCGATCAACC
ACCTATCCCAGTAAAGTCACAGTTGGGCCAACGTCGCTCATGCGTCTCAC
GATCGCCAAACCGTCAACCACCTTCCTGATGTAATGAAGCAACCCGTTCT
TCACTCCTGACTTATATGTTGGAAGGGTGCACTTACTTTCACGAACGGTT
CGACCTACAGTGGCTCCTGGGATAAAGATGCTAGACGAGGCCAAGGTATG
TGGTGGAAATGTCGGGATATGAGGATGTGCACTTCATTCCGCATTGTCGA
TGGCATTTCAGGGAGAGTCATTCGACCCGAGCATTCATAGCGAAATGGAA
TGTGCTCCGAATAGAAGTGAAATGGAAGCTTCGAGGCCAGAGGATGGGTC
GTGGCGGCATGAGGCTTGCCGAATAAATTATGTATTTCATTTCTGACCTC
GACAACATTTGGTGCATGTGGAGTCTCTGTGGGTATAAAAAGCAAGGCTT
TTGACTACACTCAAATTTTCACTTATGATCAAGATGAACATGGTCCACAT
CTACCGTATCGATGGTTGAGGGATGATGCCATGCAGTAGATTCGGTTGGA
CTCGACGTTGCTATCGGTCTCCCTGACGTTCACACCCACACGGCGAAAAC
AGGTATTCGAGATCACGGACCGGCGCATCCGTACATTCCCACCATAAAGC
CGGCCTGTTGTGGCCACGTAAGAGTCGTTCGCTTTCGAATCGAGATAACC
ACGAATCATACCAACCCTCTCAAGGTTGAGGTATGCTGCGGGTGATTGTG
GTACTCCTCAATCCGCTCATTAGTGAATATTCCTCAGGACCCGGTATTCA
CAGGGGACGCGTTCTCGGCACATGGCTCAAACGCGCGCTTTTCTCGCTGA
CGACCAAGTCCACCGTTGGAATTCCAGCATGCCTTTGGTGAAATATTCCG
AGGGAGTGAATCAATCAAGAATCTCGTGGACGCTTTTGTGCATGCCTCCA
GGAACATGCCACTACGCGAACGGTAATACCTACACGGGTTCATGGAAAGA
TGGAAAAGCGTGTGGTGCCGGGACACAGACCTTCGGTAACGGTGATCGCT
ACGACGGAGATTGGAAAGATGGGATGATGAGCGGCAAGGTAGGTTCCGCC
CGCATTCTACTTGACGTATGCAGCAATGAGTTTTCAAAGACCTCATGCCG
CCCTAGCTTCAGACGGTCCCCCTGAAGATCCTATGCCGCTCGCCGCGTCG
GATTCGGCGGTTCGCTGGGTGATGTCCACCAGGGTACGTACGTGAGTGCG
AATGGAGATAGGTACGAAGGGGAGTGGATGGACGATGAGAAGAACGGCAA
GGGGCGTCAGACATTTGCCAGCGGTGGCGGCGGCGGCGGCAGAGGGGATG
AGCCCGAAAAGGTGGCAGCTACTGGTGGTGAGAACGAATGGTACGACGGG
CAGTGGAAAGCTGGAGCATTTCACGGTCAAGGTGAGCCTTCCTCCTACTA
ACGCCAACAGAGGAGCCAAGGTGGAAATTGCTGTAGTCACTGTGTGAAAC
ATATCTGACCCTTGCCCACACGTGGACGGCTTTCCGGCCCACTGCAGACA
ACAAGTAGATAACTACGCGCCGTCCACAACACGGTTTCCTTTGCGTCCAT
TCACCCGCGCAAAATACCCGTTTACCTCTTGGGAACATAATGCAGCACTG
GTGCGATCTTCGCACACTATCGTGGTGGTCAATGCGAAATCGAAGCTGAT
ATATTTGCCTGCCCCAAACGCACGTTTGGTACACAGGAGAATACCACTTC
GCCGATAGCGGCGACGTGTATGTCGGCTCCTGGGTGGGGAACCAAATGCA
CGGGAAAGGAAAGATCGTGTATGGTGGTGACGGTGGAGAGTACCAAGGTG
GGCTTGCGTCCAACTACAAAGAACGTTGCATAGAGCAGGGCATCTTACAC
CACCAACAAGACCCAAGATCAAGTGAATGGTTGAGTGAATCGTCGAGTGT
GGAAGCATCCTATCATTCGCACGGGGTATTGCTGACGAATCGCCCATACT
CGACAGGTGACCTATGGTGTGATCTTCGACACGGTCACGGCGTACACAGT
GGCCCCGACTCCACCTATGACGGTGCCTGGAGCAACGACCGTCGGCACGG
CCATGGAAAGCTCAGTGATAAGGACGGGAACGTGTTCGAGGGTTTCTTCA
GAGAAGGTGTTTGCACCGGAATCAACATGGGAACTGGCTATTCCGCGCGT
AGGACGACGAGACACTGATACCGGAGGTAGTTGAGGATATGTCGGTATGA
GTGCAGCTGCCGGTGGCGACACGACGATGGCAATCATCCCTTGTCGCGCA
TTGACTACGTTACTACCGTAATGTTTCACCGCCAGCATCACTGTCCGGTG
ATTTTTCACGTCCCTCTCCACGCAGGAGAAAAGCATGGCAACGGTCAACT
CAAGTCCGCGGCAGGCGACGAGATTGAAGGTGATTGAAGGTGGTGACATG
GCCGTTCTCGTCTGCATTCGAAGGACCTCCGTGTAACGTGCCTTCGTAGC
GTTCATGAGATTATTGTCATCGCTGCCTCTCAATAGAGTGAAAAATTGCG
TTGGTGGCGATGATGGGTGTCTTGGCCTTCTTCACAAAATCGCACGTGGT
ACCTGTGGTTGACGGTGCTCGGTGGGCACGGACTTGGTCGCACAGGGACT
GTATCGAAAACTAGAATAATCCCAACTCGCCAGGCAGTGAAAATTGCTCT
GATGCTTGTCCTACCTCCCTGGTATCTTCCTGGTATTACGGTAACGCACA
ACACTTTCCTTTCGTGAATTGTGTCGGGTGGAAAGGTGTGTGGGACAAAG
GGCAGCTCACCGGTCAAGCGACGGTTCAGTACAAGAACGGTGATCGGTAC
ACTGGCGGCTTCGAAAGGGGCCGGAGGAGCGGTGAGGGAACTATGTTCGC
CGCCAAAACAGGGTGAGGCAATACTGGAGAAGCGTCATTGTTGAAATGCA
TGGGGGGTTGCCCGAACCGATTATTCAGTACGACCTCTGGAATGAATCTC
CGCGATGCTGTTGTTCCGGGAATACATACGCTGTCGTGGTCTGGGGGGGG
TATTGATGATTGTCAGCTTCAGATCGAAACACCCTCGAGTCCGACCGAAA
GCTCTCGCTGCCGTTTCTCTCTTGAAATCATTCTCGTGAAAGCTACGAGT
TCACCGGCACCTTCGAGAAGGGTTTGAAGAACGGTTCGGGACGTTTGCGC
CTTCCGTGCGGGGCGAGCGTGGAAGGCCTATGGATATTGGGCAATCTCGT
CGGCAACTCGAAATTTTCGTTTGCACCTGACTCCGAGTGGAACGACCCGA
GTTACTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:124932..128989+

>mRNA_E-siliculosus-1a_F_contig10.47.1 ID=mRNA_E-siliculosus-1a_F_contig10.47.1|Name=mRNA_E-siliculosus-1a_F_contig10.47.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:124932..128989+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAAGAATGGCATGCGTCATGGCACGATGTGGAAGAATGGCATGCG
TCATGGCACGGGTGCACTTACTTTCACGAACGGTTCGACCTACAGTGGCT
CCTGGGATAAAGATGCTAGACGAGGCCAAGGGTGCACTTACTTTCACGAA
CGGTTCGACCTACAGTGGCTCCTGGGATAAAGATGCTAGACGAGGCCAAG
ATGGAAAAGCGTGTGGTGCCGGGACACAGACCTTCGGTAACGGTGATCGC
TACGACGGAGATTGGAAAGATGGGATGATGAGCGGCAAGATGGAAAAGCG
TGTGGTGCCGGGACACAGACCTTCGGTAACGGTGATCGCTACGACGGAGA
TTGGAAAGATGGGATGATGAGCGGCAAGGGTACGTACGTGAGTGCGAATG
GAGATAGGTACGAAGGGGAGTGGATGGACGATGAGAAGAACGGCAAGGGG
CGTCAGACATTTGCCAGCGGTGGCGGCGGCGGCGGCAGAGGGGATGAGCC
CGAAAAGGTGGCAGCTACTGGTGGTGAGAACGAATGGTACGACGGGCAGT
GGAAAGCTGGAGCATTTCACGGTCAAGGGTACGTACGTGAGTGCGAATGG
AGATAGGTACGAAGGGGAGTGGATGGACGATGAGAAGAACGGCAAGGGGC
GTCAGACATTTGCCAGCGGTGGCGGCGGCGGCGGCAGAGGGGATGAGCCC
GAAAAGGTGGCAGCTACTGGTGGTGAGAACGAATGGTACGACGGGCAGTG
GAAAGCTGGAGCATTTCACGGTCAAGGAGAATACCACTTCGCCGATAGCG
GCGACGTGTATGTCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAAGGA
AAGATCGTGTATGGTGGTGACGGTGGAGAGTACCAAGGAGAATACCACTT
CGCCGATAGCGGCGACGTGTATGTCGGCTCCTGGGTGGGGAACCAAATGC
ACGGGAAAGGAAAGATCGTGTATGGTGGTGACGGTGGAGAGTACCAAGGT
GACCTATGGTGTGATCTTCGACACGGTCACGGCGTACACAGTGGCCCCGA
CTCCACCTATGACGGTGCCTGGAGCAACGACCGTCGGCACGGCCATGGAA
AGCTCAGTGATAAGGACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGT
GACCTATGGTGTGATCTTCGACACGGTCACGGCGTACACAGTGGCCCCGA
CTCCACCTATGACGGTGCCTGGAGCAACGACCGTCGGCACGGCCATGGAA
AGCTCAGTGATAAGGACGGGAACGTGTTCGAGGGTTTCTTCAGAGAAGGT
GTGTGGGACAAAGGGCAGCTCACCGGTCAAGCGACGGTTCAGTACAAGAA
CGGTGATCGGTACACTGGCGGCTTCGAAAGGGGCCGGAGGAGCGGTGAGG
GAACTATGTTCGCCGCCAAAACAGGGTGTGTGGGACAAAGGGCAGCTCAC
CGGTCAAGCGACGGTTCAGTACAAGAACGGTGATCGGTACACTGGCGGCT
TCGAAAGGGGCCGGAGGAGCGGTGAGGGAACTATGTTCGCCGCCAAAACA
GGCTACGAGTTCACCGGCACCTTCGAGAAGGGTTTGAAGAACGGTTCGGG
ACGTTTGCGCCTTCCGTGCGGGGCGAGCGTGGAAGGCCTATGGATATTGG
GCAATCTCGTCGGCAACTCGAAATTTTCGTTTGCACCTGACTCCGAGTGG
AACGACCCGAGTTACTGACTACGAGTTCACCGGCACCTTCGAGAAGGGTT
TGAAGAACGGTTCGGGACGTTTGCGCCTTCCGTGCGGGGCGAGCGTGGAA
GGCCTATGGATATTGGGCAATCTCGTCGGCAACTCGAAATTTTCGTTTGC
ACCTGACTCCGAGTGGAACGACCCGAGTTACTGA