mRNA_E-siliculosus-1a_F_contig10661.473.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10661.473.1
Unique NamemRNA_E-siliculosus-1a_F_contig10661.473.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5KZL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL3_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.960e-52
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 3 
Query:    3 SLTSATMKLKEGLEQAAGAATGTAGKKTPAKGKKAAAGAAAKENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAHYIVGTVSGSKPAATPPDPTPIRRSKKAPSKS 341
            SLTSAT KLKEGLEQAAGAATGTAGKKTPAKGKKA AGAA KENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMA YIV TVSGS+PAATPPDPTPIRRSKKAPSKS
Sbjct:  309 SLTSATTKLKEGLEQAAGAATGTAGKKTPAKGKKATAGAADKENGSTPSKVTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAQYIVRTVSGSQPAATPPDPTPIRRSKKAPSKS 421
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BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5JFF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.170e-42
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 2 
Query:  221 RTSTDGHGPLHRWDCFRLKTGCDAPGPDTHPALQEGAVEVVEEQEAQRGPITVTVFHRPVVFLERRRDALSSQETEAGPPE 463
            RTSTDGHGP+HR DCFRL TGCDAPGPDTHP LQEGAVEVVEEQEAQ+GPITVTVFH+PVVFLERRRDALSSQ TEAGPPE
Sbjct:   27 RTSTDGHGPVHRSDCFRLTTGCDAPGPDTHPPLQEGAVEVVEEQEAQKGPITVTVFHQPVVFLERRRDALSSQGTEAGPPE 107
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BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.610e-38
Identity = 94/128 (73.44%), Postives = 94/128 (73.44%), Query Frame = 1 
Query:  271 AQNRLRRPRT-RHPSGAPRRRRRSRRGAR-----STERSHHRHRLPPTRRLPRATPRRPLLPRNRSGAAXXXXXWQRPT*TSXPSHRLPLNPCKRLPTHTTACPPAFMQHPAYHPRHQRRVSYPKTPA 636
            A  RLRRPRT RHPSGAPRRRR            STERSHHR RLPPT  LPRATPRRPLLPRNRSGA      WQRPT  S PSHRLPL PCKRLPTHTTA PPA MQHP  HP  QRRVSYPKTPA
Sbjct:  286 APPRLRRPRTGRHPSGAPRRRRXXXXXXXXXXXXSTERSHHRPRLPPTP-LPRATPRRPLLPRNRSGAVRGSSLWQRPTSISRPSHRLPLAPCKRLPTHTTARPPASMQHPPCHP-WQRRVSYPKTPA 411
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BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Match: D7G7X2_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X2_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.580e-37
Identity = 113/123 (91.87%), Postives = 116/123 (94.31%), Query Frame = 3 
Query:  153 VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAHYIVGTVSGSKPAATPPDPTPIRRSKKAPSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPKKQTLAATDMNQQAVPPAAA 521
            VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMA YIVGTVS +KPAATPPDPTPIRRSKKAPSKS XXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXRGRP+KQTLAATD+NQQAVP AAA
Sbjct:    6 VTLDGTQHAKLVDDVAAKVYGLIEPRLMAMAKYIVGTVSATKPAATPPDPTPIRRSKKAPSKSSXXXXXXEIPXXXXXXXXXXXXXXXXXXXXXXXXXXRGRPRKQTLAATDINQQAVPRAAA 128
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10661.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KZL3_9PHAE1.960e-5294.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF5_9PHAE2.170e-4291.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A7_9PHAE3.610e-3873.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X2_ECTSI3.580e-3791.87Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10661contigE-siliculosus-1a_F_contig10661:369..2252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size639
Model size1336
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10661.473.1prot_E-siliculosus-1a_F_contig10661.473.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10661 389..1575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927567.7077034-UTR-E-siliculosus-1a_F_contig10661:368..3881622927567.7077034-UTR-E-siliculosus-1a_F_contig10661:368..388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10661 369..388 +
1696318589.4345574-UTR-E-siliculosus-1a_F_contig10661:368..3881696318589.4345574-UTR-E-siliculosus-1a_F_contig10661:368..388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10661 369..388 +
1622927568.2037756-UTR-E-siliculosus-1a_F_contig10661:1575..22521622927568.2037756-UTR-E-siliculosus-1a_F_contig10661:1575..2252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10661 1576..2252 +
1696318589.4946954-UTR-E-siliculosus-1a_F_contig10661:1575..22521696318589.4946954-UTR-E-siliculosus-1a_F_contig10661:1575..2252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10661 1576..2252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.1445694-CDS-E-siliculosus-1a_F_contig10661:388..5201622927568.1445694-CDS-E-siliculosus-1a_F_contig10661:388..520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 389..520 +
1696318589.4452033-CDS-E-siliculosus-1a_F_contig10661:388..5201696318589.4452033-CDS-E-siliculosus-1a_F_contig10661:388..520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 389..520 +
1622927568.1596055-CDS-E-siliculosus-1a_F_contig10661:715..8761622927568.1596055-CDS-E-siliculosus-1a_F_contig10661:715..876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 716..876 +
1696318589.45422-CDS-E-siliculosus-1a_F_contig10661:715..8761696318589.45422-CDS-E-siliculosus-1a_F_contig10661:715..876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 716..876 +
1622927568.1735084-CDS-E-siliculosus-1a_F_contig10661:1061..12111622927568.1735084-CDS-E-siliculosus-1a_F_contig10661:1061..1211Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 1062..1211 +
1696318589.4629278-CDS-E-siliculosus-1a_F_contig10661:1061..12111696318589.4629278-CDS-E-siliculosus-1a_F_contig10661:1061..1211Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 1062..1211 +
1622927568.1919072-CDS-E-siliculosus-1a_F_contig10661:1379..15751622927568.1919072-CDS-E-siliculosus-1a_F_contig10661:1379..1575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 1380..1575 +
1696318589.4752264-CDS-E-siliculosus-1a_F_contig10661:1379..15751696318589.4752264-CDS-E-siliculosus-1a_F_contig10661:1379..1575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10661 1380..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10661.473.1

>prot_E-siliculosus-1a_F_contig10661.473.1 ID=prot_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp
MKLKEGLEQAAGAATGTAGKKTPAKGKKAAAGAAAKENGSTPSKVTLDGT
QHAKLVDDVAAKVYGLIEPRLMAMAHYIVGTVSGSKPAATPPDPTPIRRS
KKAPSKSSRSKKHREVPSPSPSSTDPSSSSSDAETPSPPKKQKRGRPKKQ
TLAATDMNQQAVPPAAAQPMQAPAHAYYGVPPGFHAAPRLPPAASAASFI
PQNSSWMMHNLF*
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mRNA from alignment at E-siliculosus-1a_F_contig10661:369..2252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10661.473.1 ID=mRNA_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1884bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10661:369..2252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGAGCCTGACCTCTGCGACGATGAAGCTGAAGGAGGGGCTGGAGCAGGCT
GCAGGTGCCGCGACGGGTACGGCGGGCAAGAAGACCCCCGCCAAGGGCAA
AAAGGCCGCCGCTGGAGCGGCAGCCAAAGAGAATGGGAGCACCCCTTCAA
AGGTTCGACGCGTCTGTATTTTTAGTACTTGCCTGTGTTGATCATTGGTG
CCGTCAATCCACTACGAATGTTCGGCGTGTGTGTGGTTTAGGTTTATCAT
GTGTACTCGCGTTGGCACCCATTTGATGCCGACATTCCCCTCACTCCTGC
ACGACGCCCCTCCCCACCCACCCCACCCCGATCTCATTCGGGCACAGGTG
ACGCTGGACGGTACGCAACATGCAAAGCTGGTCGACGACGTTGCGGCAAA
AGTGTATGGGTTGATCGAACCTCGACTGATGGCCATGGCCCATTACATCG
TTGGGACTGTTTCCGGCTCAAAACCGGCTGCGACGCCCCCGGACCCGACA
CCCATCCGGTAAGTTGTCTCCGAACCAGTTAGCTACCTCGGACCGCGGGG
TCGGTCAGAGAAGCTCCGTCGAGCACAAGATGTGTACATGTTTGGTTCAT
GTCCTCGGTTTGAGTGAAGTGCCGGTTACTGCAGTCACCGCCCGTTTCTG
TTCTTAACTTTGTTTTTCCGTCCCGACCGGGAATCATACACAGGCGCTCC
AAGAAGGCGCCGTCGAAGTCGTCGAGGAGCAAGAAGCACAGAGAGGTCCC
ATCACCGTCACCGTCTTCCACCGACCCGTCGTCTTCCTCGAGCGACGCCG
AGACGCCCTCTCCTCCCAAGAAACAGAAGCGGGGCCGCCCGAAGTGCGTA
GAAGATGGTATTGTTTGCTTGAGATTCCGGTGTCGATGTTCTGCGAGTCT
TGGGTGGACAATATTCCGTTCGCAAGAGAACGGATGGTTACCCCCCTGTA
ACACATGTTGTTCCCTTTCCTTTGCGGTCGATTGACGCGTGATTGCCCAC
ACAATACACAGGAAGCAGACACTGGCAGCGACCGACATGAACCAGCAGGC
CGTCCCACCGGCTGCCGCTCAACCCATGCAAGCGCCTGCCCACGCATACT
ACGGCGTGCCCCCCGGCTTTCATGCAGCACCCCGCCTACCACCCGCGGCA
TCAGCGGCGAGTTTCATACCCCAAAACTCCAGCTGGATGATGCACAACCT
CTTCTAGGCTTTTTGTCGGAACAGCAGTGACGTTCGCGTCACATATTGCA
TCTTGGTAGGGTGTGTTTTCTTCGAAACGTCCAGCACGATTCTATCTAGT
TGTGGGGTATTCCCGTTCGTAGTGTGGTGGCATGTTGCTGTATTTTCCCA
TGCGGGAACATGAACGTAGAAAAATATTAGCGCTTTGGGATTAGCGTTGA
CGCGGTTATTTTTTTTTCCCCTATCCGCGCAAGGAGCTCCCGTTTTTTTG
TACATTTTTTTATTTTTTTTTACAGTTTGAGGTCGCTCGGTCTTACAAAT
AGCTCAATAATGGACGAATAGCCCGCAAGAACCACGACACGCCCCAAAAA
TAATAAGAAAATCGGGATCGTATGCGTTCCCATGTTTCTAGCGCCCGGAT
GGACGCCATGGAAAGCGCGAAAAATAGGTAGTTTCCTGAAGGCTTTGAAA
TCCAGACCTCGGGGGCACACACGAAGTCAACACGTTGCTCTTGTCTTGTG
TTGGTGTGTTGGTTCCTTGCTCGTATACGTGAAATGTCCGTTGTAACCAA
GGTGATGAAAGACAATGACACCTCATTTCGTTGGCTTCATTCAGCTGTGT
ATCCAGCACTTGCAACATCTGTTTTTCGTGCCTACTACCTTGCCACAAAA
CCACGAGGGGGGGGGGGGAAGCTGACACACGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10661:369..2252+

>mRNA_E-siliculosus-1a_F_contig10661.473.1 ID=mRNA_E-siliculosus-1a_F_contig10661.473.1|Name=mRNA_E-siliculosus-1a_F_contig10661.473.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10661:369..2252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGCTGAAGGAGGGGCTGGAGCAGGCTGCAGGTGCCGCGACGGGTAC
GGCGGGCAAGAAGACCCCCGCCAAGGGCAAAAAGGCCGCCGCTGGAGCGG
CAGCCAAAGAGAATGGGAGCACCCCTTCAAAGATGAAGCTGAAGGAGGGG
CTGGAGCAGGCTGCAGGTGCCGCGACGGGTACGGCGGGCAAGAAGACCCC
CGCCAAGGGCAAAAAGGCCGCCGCTGGAGCGGCAGCCAAAGAGAATGGGA
GCACCCCTTCAAAGGTGACGCTGGACGGTACGCAACATGCAAAGCTGGTC
GACGACGTTGCGGCAAAAGTGTATGGGTTGATCGAACCTCGACTGATGGC
CATGGCCCATTACATCGTTGGGACTGTTTCCGGCTCAAAACCGGCTGCGA
CGCCCCCGGACCCGACACCCATCCGGTGACGCTGGACGGTACGCAACATG
CAAAGCTGGTCGACGACGTTGCGGCAAAAGTGTATGGGTTGATCGAACCT
CGACTGATGGCCATGGCCCATTACATCGTTGGGACTGTTTCCGGCTCAAA
ACCGGCTGCGACGCCCCCGGACCCGACACCCATCCGGCGCTCCAAGAAGG
CGCCGTCGAAGTCGTCGAGGAGCAAGAAGCACAGAGAGGTCCCATCACCG
TCACCGTCTTCCACCGACCCGTCGTCTTCCTCGAGCGACGCCGAGACGCC
CTCTCCTCCCAAGAAACAGAAGCGGGGCCGCCCGAAGCGCTCCAAGAAGG
CGCCGTCGAAGTCGTCGAGGAGCAAGAAGCACAGAGAGGTCCCATCACCG
TCACCGTCTTCCACCGACCCGTCGTCTTCCTCGAGCGACGCCGAGACGCC
CTCTCCTCCCAAGAAACAGAAGCGGGGCCGCCCGAAGAAGCAGACACTGG
CAGCGACCGACATGAACCAGCAGGCCGTCCCACCGGCTGCCGCTCAACCC
ATGCAAGCGCCTGCCCACGCATACTACGGCGTGCCCCCCGGCTTTCATGC
AGCACCCCGCCTACCACCCGCGGCATCAGCGGCGAGTTTCATACCCCAAA
ACTCCAGCTGGATGATGCACAACCTCTTCTAGGAAGCAGACACTGGCAGC
GACCGACATGAACCAGCAGGCCGTCCCACCGGCTGCCGCTCAACCCATGC
AAGCGCCTGCCCACGCATACTACGGCGTGCCCCCCGGCTTTCATGCAGCA
CCCCGCCTACCACCCGCGGCATCAGCGGCGAGTTTCATACCCCAAAACTC
CAGCTGGATGATGCACAACCTCTTCTAG
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