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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: D7G0D1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D1_ECTSI) HSP 1 Score: 383 bits (984), Expect = 1.080e-130 Identity = 205/224 (91.52%), Postives = 209/224 (93.30%), Query Frame = 2 Query: 92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDACWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
MCSGREWPTPEARPRRGDAKRRLQEVQD QVASVCMGIEHLMNKRRRS K RGGAARV PPVGQQARLFRDKS+D AGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGE NNN NKDVP A GCDAC MWSMVGERCASLGISL N+LLFAA+G+IEGGAGVGGGRVDGSRL GGATTAATASEPDGP L VVGRVLYHE
Sbjct: 1 MCSGREWPTPEARPRRGDAKRRLQEVQDLQVASVCMGIEHLMNKRRRSTKRRGGAARVFPPVGQQARLFRDKSSDDAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGESINNN-NKDVPTASGCDACRMWSMVGERCASLGISLSNNLLFAANGSIEGGAGVGGGRVDGSRLAGGATTAATASEPDGPALRVVGRVLYHE 223
BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: A0A6H5KZ70_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ70_9PHAE) HSP 1 Score: 330 bits (846), Expect = 9.660e-110 Identity = 175/224 (78.12%), Postives = 181/224 (80.80%), Query Frame = 2 Query: 92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDACWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
MCSGREWPTPEARPRR DAKRRLQEVQD QVASVCMGIEHLMNKRRRS KGRGGAARVSPPVGQQ RLFRDKSN AGDSC GDHQ DHPSSCRLCESTLRVLSTALLHVRRC HQQ N PPA GCDAC MWS VGERC+SLGISLPN++LFAASGNIEG AG GGGRV+ +RL GGATTAATASEPDGP L VVGRV Y+E
Sbjct: 1 MCSGREWPTPEARPRRSDAKRRLQEVQDLQVASVCMGIEHLMNKRRRSTKGRGGAARVSPPVGQQTRLFRDKSNGDAGDSCSGDHQCGGDHDHPSSCRLCESTLRVLSTALLHVRRCLHQQXXXXXXXXXXXXXXNKDVPQAPPASGCDACRMWSTVGERCSSLGISLPNNILFAASGNIEGEAGDGGGRVECNRLAGGATTAATASEPDGPELRVVGRVFYNE 224
BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: A0A6H5KLU7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU7_9PHAE) HSP 1 Score: 192 bits (488), Expect = 6.420e-56 Identity = 130/234 (55.56%), Postives = 151/234 (64.53%), Query Frame = 2 Query: 92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQ-ARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAF-----GCDACWMWSMVGERCASLGISLPN----SLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
MCSG EW PEAR RR DAKRRLQE+Q+ QVASVC+GIEHLMNKRR+ AKG R +PP GQQ ARL R+ + A DSC D + DH CRLCESTLRVLSTALLHV+RCRH +K+ HLD+ + + NN PPA GCDAC MWS VG+ CASLGI N S+LF+ G +EGG VGGGRV GS ATT +T D + GRVL +E
Sbjct: 1 MCSG-EWLIPEARVRRNDAKRRLQEIQELQVASVCLGIEHLMNKRRKCAKGAATRVRPAPPAGQQQARLSRESGD--ARDSCSSDGR-----DHQHPCRLCESTLRVLSTALLHVKRCRHNRKK---HLDDDKKSGNNAR--APPAVSSSGDGCDACRMWSAVGDCCASLGIPFSNGSSSSVLFSTGGGVEGG--VGGGRVVGSSRR--ATTLSTGGV-DPLDESLGGRVLVNE 216
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 675 |
| Model size | 1205 |
| Exons | 2 |
| Ec32 ortholog | Ec-02_000900.1 |
| Ec32 ortholog description | Putative C2H2 zinc finger protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1066.469.1 >prot_E-siliculosus-1a_F_contig1066.469.1 ID=prot_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=225bp
MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAK
GRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQCGGDHDHPSSCRLC
ESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDA
CWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGA
TTAATASEPDGPGLPVVGRVLYHE* back to topmRNA from alignment at E-siliculosus-1a_F_contig1066:2120..4673- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1066.469.1 ID=mRNA_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:2120..4673- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGACCCCCGGGGTGGGCCCGTGCTGGCTGCTGGCTGCTGGCGTCCGTGC
GCCTGTGCGTTCTTGCGCTCGCTACAAACACCCCAACTACGATGTGTTCA
GGACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGGCGATGCTAA
GCGTAGGCTGCAGGAGGTGCAAGACCGCCAGGTTTGTTGCTGGTTCACAG
AGCCGCTGTAGTGATTGATCGATCAAAGCGCGAACCTCGGCCTTATTATT
CGACTTGTTTCTTCTGTAAGAACGTCAACACCTCTCTATAGTAGGCACAC
GCTTGCTTGCATGTTGTTTACCCTGGCAAGAAGTTACCGGTTGATACCGA
TGCCGCTGTCCATGCAGAGTTTCGGATGCAAAGTTGGAGGCTACAGGGGG
GGGGGGCAGGATGATGTGAGTATACTTTGGTACGACTCTCATCTGTGGCA
TACATATGGCAAAGTGTTCGCATGCCTGCCTCTTGCTCTCTGCACGTGTC
ACCCGCCCAATTACCAAGTGGGTACAAGACGAGTGCTGCACTCACGAGTC
CATTCACGGGCGGCCCTTAGTCCTCCCCTCTTGAGTGCAGCACGCACGCG
GGACCTTAGTCTCACCGGAGCCCTTTTGTAGCCGAACCCGGAGAACAGCA
GCACGCTGTTGCTCTGTTCTCTCCGGTACTTCGAATATTTAGCTCAGCCG
GCAGTTACGCCGCATGACGTGCGTGTAGCCAGAGAGCAGGACCGCCAGCC
GAGCAGACAAGGAGTATCCAACCCCCCCACACACCCTGTCCGAATGTTCT
TCCTTTCCTCGTGTGAACGAAGGCTATCATCGCGATTGAGTCATCCGTGC
AACCTCGTCTCTGAATCGAGCGAGAGAGCGACTCACACTCACCAGCTCTA
TCACGCCCTCTGGCTGCTTCAACAAGCGAACGAGTGTTTGCCTGTGCTCA
CGGTGGTGCTGTTGAACCCTACGTGCCACAATACATCTTCGACTAGGCAT
CAATACTGCTGCTGTTGCTGCTGCTTTTTCCATCTTTCTAGTATTTGAAG
CCCCATACGTTGAGAATCGCAGTGATGCCAGTCGGTACAAACACACTTCC
TTTGCCGCTCTGATGCTGTGGGCGGGCGTCGGGCGTTTTCTACATCGTGG
ATTCGGTGATCGTGCCTGTGCCACCCCTTGGTCTTAACAACTCTACAACA
AGTTGGGATGCTAGCCACGCGTGACCCACCACCCCCCCCCGCCCCGCCTA
CGATCGCAATGTTGTTTACTGTCTTGACTTCTTTGTCTGACTCGTGGTTG
CTACCCACACACGAAGTTGGTTCACTCCCGACTGCAAGACGGTCGCATGT
AGATCAATCGTCTTCGACCATTCATGGATCCCTTTGCAGGTGGCGTCCTG
AAGCTCGGCAGATCGGGCGGGCGCTCGTCGCGTTATTCTGGCCTCACCAC
CCCACCCCCAATCATTGTTGTTGTGGCCTCATCTTCCCTGTAAAAAATCT
TCGCTCGTATTTCCCCGACCGCACCGCCAGGTAGCCTCGGTGTGCATGGG
CATCGAGCATCTCATGAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAG
GCGCCGCACGAGTATCCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGA
GACAAGAGCAACGACGGCGCCGGCGACTCATGCGGCGGCGATCACCAGTG
CGGCGGCGACCACGACCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGC
TCCGCGTTCTCAGCACCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAG
CAGAAACAGAAGCAGCAGCATCTCGACAACGGCGAATGCAACAACAACAA
CAAGAACAAGGACGTCCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGT
GGTCCATGGTCGGCGAACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAAC
AGTCTTCTCTTCGCCGCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGG
CGGTGGCAGGGTGGACGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTG
CTACCGCTTCTGAACCGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTA
CTCTATCATGAGTGAGCGGCCCTCGATATATCGTTGTGAATGGGAGATAA
TGCGTAGTGTTTGGTGTCGGCGGCGCCCTGTTTTATATTCCTCGATAGCG
TGTGAGGGGGTGAAAGGCGGCGTAAGATATCCACTCTTTGAAAACGGTAT
GCCTATTTGGGACTGTAGTTTCCGCACATGCGATTGCTTTGTAGTGACGA
GACTAATGAAGGTTAAGAGTCATGATCAAGGGTCGACAGAGGCACGTGTT
GCGGACGATTCTATGCAACATGGGCGTTTTGCACACCGGCAGACTCGTTA
GCTCATCCGACAGTTTTTAGCATGAACGGGTTAGGTTGTCGGCAAAAGTT
GGTTCCGTTCCGCTGGTGTTTCGTGCGTATGTGTGGAACGTCTTCTTTCC
GCGCTCGTCCGGTTGCGGGTCCGCAGACGAGCAAAGGGGTTTAGTCAGCG
GAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1066:2120..4673- >mRNA_E-siliculosus-1a_F_contig1066.469.1 ID=mRNA_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:2120..4673- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTTCAGGACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGG
CGATGCTAAGCGTAGGCTGCAGGAGGTGCAAGACCGCCAGATGTGTTCAG
GACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGGCGATGCTAAG
CGTAGGCTGCAGGAGGTGCAAGACCGCCAGGTAGCCTCGGTGTGCATGGG
CATCGAGCATCTCATGAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAG
GCGCCGCACGAGTATCCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGA
GACAAGAGCAACGACGGCGCCGGCGACTCATGCGGCGGCGATCACCAGTG
CGGCGGCGACCACGACCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGC
TCCGCGTTCTCAGCACCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAG
CAGAAACAGAAGCAGCAGCATCTCGACAACGGCGAATGCAACAACAACAA
CAAGAACAAGGACGTCCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGT
GGTCCATGGTCGGCGAACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAAC
AGTCTTCTCTTCGCCGCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGG
CGGTGGCAGGGTGGACGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTG
CTACCGCTTCTGAACCGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTA
CTCTATCATGAGTGAGTAGCCTCGGTGTGCATGGGCATCGAGCATCTCAT
GAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAGGCGCCGCACGAGTAT
CCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGAGACAAGAGCAACGAC
GGCGCCGGCGACTCATGCGGCGGCGATCACCAGTGCGGCGGCGACCACGA
CCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGCTCCGCGTTCTCAGCA
CCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAGCAGAAACAGAAGCAG
CAGCATCTCGACAACGGCGAATGCAACAACAACAACAAGAACAAGGACGT
CCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGTGGTCCATGGTCGGCG
AACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAACAGTCTTCTCTTCGCC
GCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGGCGGTGGCAGGGTGGA
CGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTGCTACCGCTTCTGAAC
CGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTACTCTATCATGAGTGA back to top
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