mRNA_E-siliculosus-1a_F_contig1066.469.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1066.469.1
Unique NamemRNA_E-siliculosus-1a_F_contig1066.469.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: D7G0D1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D1_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.080e-130
Identity = 205/224 (91.52%), Postives = 209/224 (93.30%), Query Frame = 2 
Query:   92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDACWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
            MCSGREWPTPEARPRRGDAKRRLQEVQD QVASVCMGIEHLMNKRRRS K RGGAARV PPVGQQARLFRDKS+D AGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGE  NNN NKDVP A GCDAC MWSMVGERCASLGISL N+LLFAA+G+IEGGAGVGGGRVDGSRL GGATTAATASEPDGP L VVGRVLYHE
Sbjct:    1 MCSGREWPTPEARPRRGDAKRRLQEVQDLQVASVCMGIEHLMNKRRRSTKRRGGAARVFPPVGQQARLFRDKSSDDAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGESINNN-NKDVPTASGCDACRMWSMVGERCASLGISLSNNLLFAANGSIEGGAGVGGGRVDGSRLAGGATTAATASEPDGPALRVVGRVLYHE 223
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BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: A0A6H5KZ70_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ70_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 9.660e-110
Identity = 175/224 (78.12%), Postives = 181/224 (80.80%), Query Frame = 2 
Query:   92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDACWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
            MCSGREWPTPEARPRR DAKRRLQEVQD QVASVCMGIEHLMNKRRRS KGRGGAARVSPPVGQQ RLFRDKSN  AGDSC GDHQ     DHPSSCRLCESTLRVLSTALLHVRRC HQQ              N      PPA GCDAC MWS VGERC+SLGISLPN++LFAASGNIEG AG GGGRV+ +RL GGATTAATASEPDGP L VVGRV Y+E
Sbjct:    1 MCSGREWPTPEARPRRSDAKRRLQEVQDLQVASVCMGIEHLMNKRRRSTKGRGGAARVSPPVGQQTRLFRDKSNGDAGDSCSGDHQCGGDHDHPSSCRLCESTLRVLSTALLHVRRCLHQQXXXXXXXXXXXXXXNKDVPQAPPASGCDACRMWSTVGERCSSLGISLPNNILFAASGNIEGEAGDGGGRVECNRLAGGATTAATASEPDGPELRVVGRVFYNE 224
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Match: A0A6H5KLU7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 6.420e-56
Identity = 130/234 (55.56%), Postives = 151/234 (64.53%), Query Frame = 2 
Query:   92 MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAKGRGGAARVSPPVGQQ-ARLFRDKSNDGAGDSCGGDHQXXXXXDHPSSCRLCESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAF-----GCDACWMWSMVGERCASLGISLPN----SLLFAASGNIEGGAGVGGGRVDGSRLPGGATTAATASEPDGPGLPVVGRVLYHE 763
            MCSG EW  PEAR RR DAKRRLQE+Q+ QVASVC+GIEHLMNKRR+ AKG     R +PP GQQ ARL R+  +  A DSC  D +     DH   CRLCESTLRVLSTALLHV+RCRH +K+   HLD+ + + NN     PPA      GCDAC MWS VG+ CASLGI   N    S+LF+  G +EGG  VGGGRV GS     ATT +T    D     + GRVL +E
Sbjct:    1 MCSG-EWLIPEARVRRNDAKRRLQEIQELQVASVCLGIEHLMNKRRKCAKGAATRVRPAPPAGQQQARLSRESGD--ARDSCSSDGR-----DHQHPCRLCESTLRVLSTALLHVKRCRHNRKK---HLDDDKKSGNNAR--APPAVSSSGDGCDACRMWSAVGDCCASLGIPFSNGSSSSVLFSTGGGVEGG--VGGGRVVGSSRR--ATTLSTGGV-DPLDESLGGRVLVNE 216
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1066.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0D1_ECTSI1.080e-13091.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ70_9PHAE9.660e-11078.13C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KLU7_9PHAE6.420e-5655.56C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1066contigE-siliculosus-1a_F_contig1066:2120..4673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size675
Model size1205
Exons2
Ec32 orthologEc-02_000900.1
Ec32 ortholog descriptionPutative C2H2 zinc finger protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1066.469.1prot_E-siliculosus-1a_F_contig1066.469.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1066 2559..4582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927567.1948822-UTR-E-siliculosus-1a_F_contig1066:2119..25581622927567.1948822-UTR-E-siliculosus-1a_F_contig1066:2119..2558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1066 2120..2558 -
1696318589.2178652-UTR-E-siliculosus-1a_F_contig1066:2119..25581696318589.2178652-UTR-E-siliculosus-1a_F_contig1066:2119..2558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1066 2120..2558 -
1622927567.232198-UTR-E-siliculosus-1a_F_contig1066:4582..46731622927567.232198-UTR-E-siliculosus-1a_F_contig1066:4582..4673Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1066 4583..4673 -
1696318589.2592313-UTR-E-siliculosus-1a_F_contig1066:4582..46731696318589.2592313-UTR-E-siliculosus-1a_F_contig1066:4582..4673Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1066 4583..4673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927567.2080448-CDS-E-siliculosus-1a_F_contig1066:2558..31431622927567.2080448-CDS-E-siliculosus-1a_F_contig1066:2558..3143Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1066 2559..3143 -
1696318589.2310932-CDS-E-siliculosus-1a_F_contig1066:2558..31431696318589.2310932-CDS-E-siliculosus-1a_F_contig1066:2558..3143Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1066 2559..3143 -
1622927567.2216341-CDS-E-siliculosus-1a_F_contig1066:4492..45821622927567.2216341-CDS-E-siliculosus-1a_F_contig1066:4492..4582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1066 4493..4582 -
1696318589.2484546-CDS-E-siliculosus-1a_F_contig1066:4492..45821696318589.2484546-CDS-E-siliculosus-1a_F_contig1066:4492..4582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1066 4493..4582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1066.469.1

>prot_E-siliculosus-1a_F_contig1066.469.1 ID=prot_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=225bp
MCSGREWPTPEARPRRGDAKRRLQEVQDRQVASVCMGIEHLMNKRRRSAK
GRGGAARVSPPVGQQARLFRDKSNDGAGDSCGGDHQCGGDHDHPSSCRLC
ESTLRVLSTALLHVRRCRHQQKQKQQHLDNGECNNNNKNKDVPPAFGCDA
CWMWSMVGERCASLGISLPNSLLFAASGNIEGGAGVGGGRVDGSRLPGGA
TTAATASEPDGPGLPVVGRVLYHE*
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mRNA from alignment at E-siliculosus-1a_F_contig1066:2120..4673-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1066.469.1 ID=mRNA_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:2120..4673- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGACCCCCGGGGTGGGCCCGTGCTGGCTGCTGGCTGCTGGCGTCCGTGC
GCCTGTGCGTTCTTGCGCTCGCTACAAACACCCCAACTACGATGTGTTCA
GGACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGGCGATGCTAA
GCGTAGGCTGCAGGAGGTGCAAGACCGCCAGGTTTGTTGCTGGTTCACAG
AGCCGCTGTAGTGATTGATCGATCAAAGCGCGAACCTCGGCCTTATTATT
CGACTTGTTTCTTCTGTAAGAACGTCAACACCTCTCTATAGTAGGCACAC
GCTTGCTTGCATGTTGTTTACCCTGGCAAGAAGTTACCGGTTGATACCGA
TGCCGCTGTCCATGCAGAGTTTCGGATGCAAAGTTGGAGGCTACAGGGGG
GGGGGGCAGGATGATGTGAGTATACTTTGGTACGACTCTCATCTGTGGCA
TACATATGGCAAAGTGTTCGCATGCCTGCCTCTTGCTCTCTGCACGTGTC
ACCCGCCCAATTACCAAGTGGGTACAAGACGAGTGCTGCACTCACGAGTC
CATTCACGGGCGGCCCTTAGTCCTCCCCTCTTGAGTGCAGCACGCACGCG
GGACCTTAGTCTCACCGGAGCCCTTTTGTAGCCGAACCCGGAGAACAGCA
GCACGCTGTTGCTCTGTTCTCTCCGGTACTTCGAATATTTAGCTCAGCCG
GCAGTTACGCCGCATGACGTGCGTGTAGCCAGAGAGCAGGACCGCCAGCC
GAGCAGACAAGGAGTATCCAACCCCCCCACACACCCTGTCCGAATGTTCT
TCCTTTCCTCGTGTGAACGAAGGCTATCATCGCGATTGAGTCATCCGTGC
AACCTCGTCTCTGAATCGAGCGAGAGAGCGACTCACACTCACCAGCTCTA
TCACGCCCTCTGGCTGCTTCAACAAGCGAACGAGTGTTTGCCTGTGCTCA
CGGTGGTGCTGTTGAACCCTACGTGCCACAATACATCTTCGACTAGGCAT
CAATACTGCTGCTGTTGCTGCTGCTTTTTCCATCTTTCTAGTATTTGAAG
CCCCATACGTTGAGAATCGCAGTGATGCCAGTCGGTACAAACACACTTCC
TTTGCCGCTCTGATGCTGTGGGCGGGCGTCGGGCGTTTTCTACATCGTGG
ATTCGGTGATCGTGCCTGTGCCACCCCTTGGTCTTAACAACTCTACAACA
AGTTGGGATGCTAGCCACGCGTGACCCACCACCCCCCCCCGCCCCGCCTA
CGATCGCAATGTTGTTTACTGTCTTGACTTCTTTGTCTGACTCGTGGTTG
CTACCCACACACGAAGTTGGTTCACTCCCGACTGCAAGACGGTCGCATGT
AGATCAATCGTCTTCGACCATTCATGGATCCCTTTGCAGGTGGCGTCCTG
AAGCTCGGCAGATCGGGCGGGCGCTCGTCGCGTTATTCTGGCCTCACCAC
CCCACCCCCAATCATTGTTGTTGTGGCCTCATCTTCCCTGTAAAAAATCT
TCGCTCGTATTTCCCCGACCGCACCGCCAGGTAGCCTCGGTGTGCATGGG
CATCGAGCATCTCATGAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAG
GCGCCGCACGAGTATCCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGA
GACAAGAGCAACGACGGCGCCGGCGACTCATGCGGCGGCGATCACCAGTG
CGGCGGCGACCACGACCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGC
TCCGCGTTCTCAGCACCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAG
CAGAAACAGAAGCAGCAGCATCTCGACAACGGCGAATGCAACAACAACAA
CAAGAACAAGGACGTCCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGT
GGTCCATGGTCGGCGAACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAAC
AGTCTTCTCTTCGCCGCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGG
CGGTGGCAGGGTGGACGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTG
CTACCGCTTCTGAACCGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTA
CTCTATCATGAGTGAGCGGCCCTCGATATATCGTTGTGAATGGGAGATAA
TGCGTAGTGTTTGGTGTCGGCGGCGCCCTGTTTTATATTCCTCGATAGCG
TGTGAGGGGGTGAAAGGCGGCGTAAGATATCCACTCTTTGAAAACGGTAT
GCCTATTTGGGACTGTAGTTTCCGCACATGCGATTGCTTTGTAGTGACGA
GACTAATGAAGGTTAAGAGTCATGATCAAGGGTCGACAGAGGCACGTGTT
GCGGACGATTCTATGCAACATGGGCGTTTTGCACACCGGCAGACTCGTTA
GCTCATCCGACAGTTTTTAGCATGAACGGGTTAGGTTGTCGGCAAAAGTT
GGTTCCGTTCCGCTGGTGTTTCGTGCGTATGTGTGGAACGTCTTCTTTCC
GCGCTCGTCCGGTTGCGGGTCCGCAGACGAGCAAAGGGGTTTAGTCAGCG
GAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1066:2120..4673-

>mRNA_E-siliculosus-1a_F_contig1066.469.1 ID=mRNA_E-siliculosus-1a_F_contig1066.469.1|Name=mRNA_E-siliculosus-1a_F_contig1066.469.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1066:2120..4673- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTTCAGGACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGG
CGATGCTAAGCGTAGGCTGCAGGAGGTGCAAGACCGCCAGATGTGTTCAG
GACGAGAATGGCCGACCCCTGAAGCTAGACCGCGCCGGGGCGATGCTAAG
CGTAGGCTGCAGGAGGTGCAAGACCGCCAGGTAGCCTCGGTGTGCATGGG
CATCGAGCATCTCATGAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAG
GCGCCGCACGAGTATCCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGA
GACAAGAGCAACGACGGCGCCGGCGACTCATGCGGCGGCGATCACCAGTG
CGGCGGCGACCACGACCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGC
TCCGCGTTCTCAGCACCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAG
CAGAAACAGAAGCAGCAGCATCTCGACAACGGCGAATGCAACAACAACAA
CAAGAACAAGGACGTCCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGT
GGTCCATGGTCGGCGAACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAAC
AGTCTTCTCTTCGCCGCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGG
CGGTGGCAGGGTGGACGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTG
CTACCGCTTCTGAACCGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTA
CTCTATCATGAGTGAGTAGCCTCGGTGTGCATGGGCATCGAGCATCTCAT
GAACAAGCGCCGGAGATCCGCCAAGGGGCGAGGAGGCGCCGCACGAGTAT
CCCCCCCGGTGGGGCAACAAGCACGCCTCTTCCGAGACAAGAGCAACGAC
GGCGCCGGCGACTCATGCGGCGGCGATCACCAGTGCGGCGGCGACCACGA
CCACCCTTCTTCATGCCGGCTCTGCGAGTCGACGCTCCGCGTTCTCAGCA
CCGCCCTCTTGCACGTCAGACGCTGCCGTCACCAGCAGAAACAGAAGCAG
CAGCATCTCGACAACGGCGAATGCAACAACAACAACAAGAACAAGGACGT
CCCTCCCGCCTTCGGCTGCGACGCCTGCTGGATGTGGTCCATGGTCGGCG
AACGCTGCGCTTCCCTCGGCATTTCCCTCCCCAACAGTCTTCTCTTCGCC
GCCAGTGGTAATATCGAAGGCGGAGCCGGTGTTGGCGGTGGCAGGGTGGA
CGGCAGCAGGCTCCCTGGTGGCGCTACGACCGCTGCTACCGCTTCTGAAC
CGGACGGGCCGGGGCTGCCGGTGGTGGGAAGGGTACTCTATCATGAGTGA
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