Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)
HSP 1 Score: 125 bits (313), Expect = 9.070e-34
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 19 SIADSL--VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDDSLSTIFHPSF 318
SIADSL +MYG D++HPLPETV +Q++V EYV +VT +AC AA++KG LDTECFV VR+DK K KR + D ++HI NCTR R+ DD+L T++HP+F
Sbjct: 23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNL-TVYHPTF 123
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)
HSP 1 Score: 75.1 bits (183), Expect = 2.190e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
+MYGA DDEHPLPETVDC+QQLVAEYVSHVTSEACL +
Sbjct: 32 MMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)
HSP 1 Score: 72.4 bits (176), Expect = 1.180e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
+MYGA DDEHPLPETV C+QQLVAEYVSHVTSEACL +
Sbjct: 1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)
HSP 1 Score: 72.0 bits (175), Expect = 2.040e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
+MYGA DDEHPLPETV C+QQLVAEYVSHVTSEACL +
Sbjct: 9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
F0WG55_9STRA (Uncharacterized protein AlNc14C88G5585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG55_9STRA)
HSP 1 Score: 59.7 bits (143), Expect = 1.230e-8
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 19 SIADSLVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRA 225
S+ D ++ +G DD P+ E+V +++ V EY+ +T +A + +KG LDTECF+FT+R D+ K R
Sbjct: 58 SVRDMMIGFG--DDMEPMEESVAVMKEFVVEYIHCMTKKAVDVSAVKGKLDTECFIFTIRKDQEKYGRV 124
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
A0A5D6XFL5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFL5_9STRA)
HSP 1 Score: 57.8 bits (138), Expect = 1.640e-7
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKR 222
+M+G D+ PL ET ++ + EYV +T +A A +KG LDTECF+F +R D + +R
Sbjct: 123 MMFGFGDEVEPLDETAALMEDMTVEYVHAMTKKALDLAQVKGKLDTECFIFLIRKDPERYER 184
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
M4B2B9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2B9_HYAAE)
HSP 1 Score: 56.2 bits (134), Expect = 3.640e-7
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 22 IADSL--VMYGAADDEHPLPETVDCLQQLVAEYV------SHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDDSLSTIFHPSFE 321
+ DS+ +++G D+ PL ET +++LV EYV S T +A A +KG LDTECF+F +R D + R + L N+ RA +L++ F PS E
Sbjct: 70 LVDSIKHMLFGFGDENEPLDETAQLMEELVVEYVHAMVFESAYTKKAMDLAAVKGKLDTECFIFLIRKDPERYNRVAEL----LRANDEFRA-----ALNSGFDPSDE 168
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
A0A6A6XXP3_9PLEO (TFIID-18kDa-domain-containing protein n=1 Tax=Melanomma pulvis-pyrius CBS 109.77 TaxID=1314802 RepID=A0A6A6XXP3_9PLEO)
HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 34 LVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAAD--LKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDD 288
L+ +G DD+HPLPETV CL ++V +Y+ EA A + + + F F +R D KL R + + +TD + +A TD+
Sbjct: 24 LIAFG--DDDHPLPETVKCLDEIVTDYIIETCHEAASVAHHARRAKIKLDDFKFMLRRDTTKLGRVSEMLETDKELKRKRKAFDTDE 108
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
A0A397E7E0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7E0_9STRA)
HSP 1 Score: 53.1 bits (126), Expect = 1.490e-6
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTD 246
+M+G D P +TV+ ++++ EY+ +T +A + ++G LD +C +F+VR D+ L RAN + + +
Sbjct: 16 MMHGFGDVWEPDTDTVELMEEIAVEYIRSMTKKAMEISAIRGKLDVDCLLFSVRKDEETLDRANQLLEAN 85
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match:
W4FSD5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4FSD5_9STRA)
HSP 1 Score: 53.1 bits (126), Expect = 5.650e-6
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTD 246
+M+G D P +TV+ ++++ EY+ +T +A + ++G LD +C +F+VR D+ L RAN + + +
Sbjct: 91 MMHGFGDVWEPDTDTVELMEEIAVEYIRSMTKKAMEISAIRGKLDVDCLLFSVRKDEETLDRANQLLEAN 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 17
0 1 Expect = 9.07e-34 / Id = 57.84 Expect = 2.19e-15 / Id = 86.84 Expect = 1.18e-14 / Id = 84.21 Expect = 2.04e-14 / Id = 84.21 Expect = 1.23e-8 / Id = 39.13 Expect = 1.64e-7 / Id = 40.32 Expect = 3.64e-7 / Id = 35.19 Expect = 1.11e-6 / Id = 34.48 Expect = 1.49e-6 / Id = 31.43 Expect = 5.65e-6 / Id = 31.43 Sequence D7FXB5_ECTSI Q8QN93_ESV1K D8LPL2_ECTSI Q8QN96_ESV1K F0WG55_9STRA A0A5D6XFL5_9STRA M4B2B9_HYAAE A0A6A6XXP3_9PLEO A0A397E7E0_9STRA W4FSD5_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 393 Model size 393 Exons 3 Ec32 ortholog Ec-06_004990.1 Ec32 ortholog description EsV-1-193/196 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko01000,ko03021 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. K EC 1.16.1.7 Ec32 ortholog description EsV-1-193/196 Transcription initiation factor TFIID subunit 13 EggNOG OGs COG5248@1,KOG3901@2759 EggNOG free text desc. protein heterodimerization activity GOs GO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141 KEGG Pathway ko03022,ko05168,map03022,map05168 KEGG ko ko:K00521,ko:K03127 Preferred name TAF13 Seed eggNOG ortholog 2880.D7FXB5 Seed ortholog evalue 6.7e-26 Seed ortholog score 123.6 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10659.468.1
>prot_E-siliculosus-1a_F_contig10659.468.1 ID=prot_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=131bp
MEGGSDSIADSLVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA back to top mRNA from alignment at E-siliculosus-1a_F_contig10659:1546..2157+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10659.468.1 ID=mRNA_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:1546..2157+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGGAAGGAGGTAGCGACTCGATTGCGGACAGCTT GTCAGCTTGAGTGAT
TGTGTTATTGTATTTACTCACATTGTTTGACTATCATATCATATTTACAC
CCTTCACAAGTTTCACAACGTTTTTTCGGGAACGACGTGCATACCACCGT
TGTTGCAGGGTGATGTACGGCGCCGCAGATGACGAGCACCCGTTGCCGGA
AACGGTCGATTGCCTGCAGCAGCTGGTCGCGGAGTATGTGAGCCACGTCA
CATCCGAGGCTTGTTTG GTGAGAACTTCACTGGTATTTTTATTGTGATTA
TGAATAAATCACCATGCTTTTTTCAAGTCACACAAACAATCTAGGACATA
TTACTTGCAACAGGCGGCCGACCTCAAAGGCAACCTGGACACCGAGTGCT
TCGTCTTCACCGTCCGCCACGATAAGCACAAGTTGAAGCGGGCCAACCAC
ATCCGGGACACCGACCTGCACATCAACAACTGTACGCGCGCGCGCTTCAC
AGACGACAGCCTGTCCACCATCTTTCACCCGTCGTTCGAAGCCGTGGCGC
CACCACAGCAGACGATACCGGCTTCAGACGGGGTTGCAGGGGGGGGCAAG
GAGACTCTCTGA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10659:1546..2157+
>mRNA_E-siliculosus-1a_F_contig10659.468.1 ID=mRNA_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:1546..2157+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top