mRNA_E-siliculosus-1a_F_contig10659.468.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10659.468.1
Unique NamemRNA_E-siliculosus-1a_F_contig10659.468.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 9.070e-34
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:   19 SIADSL--VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDDSLSTIFHPSF 318
            SIADSL  +MYG  D++HPLPETV  +Q++V EYV +VT +AC AA++KG LDTECFV  VR+DK K KR   + D ++HI NCTR R+ DD+L T++HP+F
Sbjct:   23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNL-TVYHPTF 123
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 75.1 bits (183), Expect = 2.190e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
            +MYGA DDEHPLPETVDC+QQLVAEYVSHVTSEACL +
Sbjct:   32 MMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
            +MYGA DDEHPLPETV C+QQLVAEYVSHVTSEACL +
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 72.0 bits (175), Expect = 2.040e-14
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA 150
            +MYGA DDEHPLPETV C+QQLVAEYVSHVTSEACL +
Sbjct:    9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: F0WG55_9STRA (Uncharacterized protein AlNc14C88G5585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG55_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.230e-8
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   19 SIADSLVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRA 225
            S+ D ++ +G  DD  P+ E+V  +++ V EY+  +T +A   + +KG LDTECF+FT+R D+ K  R 
Sbjct:   58 SVRDMMIGFG--DDMEPMEESVAVMKEFVVEYIHCMTKKAVDVSAVKGKLDTECFIFTIRKDQEKYGRV 124
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: A0A5D6XFL5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFL5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-7
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKR 222
            +M+G  D+  PL ET   ++ +  EYV  +T +A   A +KG LDTECF+F +R D  + +R
Sbjct:  123 MMFGFGDEVEPLDETAALMEDMTVEYVHAMTKKALDLAQVKGKLDTECFIFLIRKDPERYER 184
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: M4B2B9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2B9_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.640e-7
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:   22 IADSL--VMYGAADDEHPLPETVDCLQQLVAEYV------SHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDDSLSTIFHPSFE 321
            + DS+  +++G  D+  PL ET   +++LV EYV      S  T +A   A +KG LDTECF+F +R D  +  R   +    L  N+  RA     +L++ F PS E
Sbjct:   70 LVDSIKHMLFGFGDENEPLDETAQLMEELVVEYVHAMVFESAYTKKAMDLAAVKGKLDTECFIFLIRKDPERYNRVAEL----LRANDEFRA-----ALNSGFDPSDE 168
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: A0A6A6XXP3_9PLEO (TFIID-18kDa-domain-containing protein n=1 Tax=Melanomma pulvis-pyrius CBS 109.77 TaxID=1314802 RepID=A0A6A6XXP3_9PLEO)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   34 LVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAAD--LKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDD 288
            L+ +G  DD+HPLPETV CL ++V +Y+     EA   A    +  +  + F F +R D  KL R + + +TD  +    +A  TD+
Sbjct:   24 LIAFG--DDDHPLPETVKCLDEIVTDYIIETCHEAASVAHHARRAKIKLDDFKFMLRRDTTKLGRVSEMLETDKELKRKRKAFDTDE 108
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: A0A397E7E0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7E0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.490e-6
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTD 246
            +M+G  D   P  +TV+ ++++  EY+  +T +A   + ++G LD +C +F+VR D+  L RAN + + +
Sbjct:   16 MMHGFGDVWEPDTDTVELMEEIAVEYIRSMTKKAMEISAIRGKLDVDCLLFSVRKDEETLDRANQLLEAN 85
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Match: W4FSD5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4FSD5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.650e-6
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   37 VMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAADLKGNLDTECFVFTVRHDKHKLKRANHIRDTD 246
            +M+G  D   P  +TV+ ++++  EY+  +T +A   + ++G LD +C +F+VR D+  L RAN + + +
Sbjct:   91 MMHGFGDVWEPDTDTVELMEEIAVEYIRSMTKKAMEISAIRGKLDVDCLLFSVRKDEETLDRANQLLEAN 160
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10659.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FXB5_ECTSI9.070e-3457.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
Q8QN93_ESV1K2.190e-1586.84EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL2_ECTSI1.180e-1484.21EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Q8QN96_ESV1K2.040e-1484.21EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
F0WG55_9STRA1.230e-839.13Uncharacterized protein AlNc14C88G5585 n=1 Tax=Alb... [more]
A0A5D6XFL5_9STRA1.640e-740.32Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
M4B2B9_HYAAE3.640e-735.19Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6A6XXP3_9PLEO1.110e-634.48TFIID-18kDa-domain-containing protein n=1 Tax=Mela... [more]
A0A397E7E0_9STRA1.490e-631.43Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4FSD5_9STRA5.650e-631.43Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10659contigE-siliculosus-1a_F_contig10659:1546..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size393
Model size393
Exons3
Ec32 orthologEc-06_004990.1
Ec32 ortholog descriptionEsV-1-193/196
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03021
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EC1.16.1.7
Ec32 ortholog descriptionEsV-1-193/196 Transcription initiation factor TFIID subunit 13
EggNOG OGsCOG5248@1,KOG3901@2759
EggNOG free text desc.protein heterodimerization activity
GOsGO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
KEGG Pathwayko03022,ko05168,map03022,map05168
KEGG koko:K00521,ko:K03127
Preferred nameTAF13
Seed eggNOG ortholog2880.D7FXB5
Seed ortholog evalue6.7e-26
Seed ortholog score123.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10659.468.1prot_E-siliculosus-1a_F_contig10659.468.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10659 1546..2157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927566.0804067-CDS-E-siliculosus-1a_F_contig10659:1545..15801622927566.0804067-CDS-E-siliculosus-1a_F_contig10659:1545..1580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1546..1580 +
1696318589.1200862-CDS-E-siliculosus-1a_F_contig10659:1545..15801696318589.1200862-CDS-E-siliculosus-1a_F_contig10659:1545..1580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1546..1580 +
1622927566.123248-CDS-E-siliculosus-1a_F_contig10659:1703..18121622927566.123248-CDS-E-siliculosus-1a_F_contig10659:1703..1812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1704..1812 +
1696318589.1353815-CDS-E-siliculosus-1a_F_contig10659:1703..18121696318589.1353815-CDS-E-siliculosus-1a_F_contig10659:1703..1812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1704..1812 +
1622927566.1337423-CDS-E-siliculosus-1a_F_contig10659:1908..21571622927566.1337423-CDS-E-siliculosus-1a_F_contig10659:1908..2157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1909..2157 +
1696318589.1475098-CDS-E-siliculosus-1a_F_contig10659:1908..21571696318589.1475098-CDS-E-siliculosus-1a_F_contig10659:1908..2157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 1909..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10659.468.1

>prot_E-siliculosus-1a_F_contig10659.468.1 ID=prot_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=131bp
MEGGSDSIADSLVMYGAADDEHPLPETVDCLQQLVAEYVSHVTSEACLAA
DLKGNLDTECFVFTVRHDKHKLKRANHIRDTDLHINNCTRARFTDDSLST
IFHPSFEAVAPPQQTIPASDGVAGGGKETL*
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mRNA from alignment at E-siliculosus-1a_F_contig10659:1546..2157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10659.468.1 ID=mRNA_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:1546..2157+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGGAGGTAGCGACTCGATTGCGGACAGCTTGTCAGCTTGAGTGAT
TGTGTTATTGTATTTACTCACATTGTTTGACTATCATATCATATTTACAC
CCTTCACAAGTTTCACAACGTTTTTTCGGGAACGACGTGCATACCACCGT
TGTTGCAGGGTGATGTACGGCGCCGCAGATGACGAGCACCCGTTGCCGGA
AACGGTCGATTGCCTGCAGCAGCTGGTCGCGGAGTATGTGAGCCACGTCA
CATCCGAGGCTTGTTTGGTGAGAACTTCACTGGTATTTTTATTGTGATTA
TGAATAAATCACCATGCTTTTTTCAAGTCACACAAACAATCTAGGACATA
TTACTTGCAACAGGCGGCCGACCTCAAAGGCAACCTGGACACCGAGTGCT
TCGTCTTCACCGTCCGCCACGATAAGCACAAGTTGAAGCGGGCCAACCAC
ATCCGGGACACCGACCTGCACATCAACAACTGTACGCGCGCGCGCTTCAC
AGACGACAGCCTGTCCACCATCTTTCACCCGTCGTTCGAAGCCGTGGCGC
CACCACAGCAGACGATACCGGCTTCAGACGGGGTTGCAGGGGGGGGCAAG
GAGACTCTCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10659:1546..2157+

>mRNA_E-siliculosus-1a_F_contig10659.468.1 ID=mRNA_E-siliculosus-1a_F_contig10659.468.1|Name=mRNA_E-siliculosus-1a_F_contig10659.468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:1546..2157+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGGAGGTAGCGACTCGATTGCGGACAGCTTATGGAAGGAGGTAGC
GACTCGATTGCGGACAGCTTGGTGATGTACGGCGCCGCAGATGACGAGCA
CCCGTTGCCGGAAACGGTCGATTGCCTGCAGCAGCTGGTCGCGGAGTATG
TGAGCCACGTCACATCCGAGGCTTGTTTGGGTGATGTACGGCGCCGCAGA
TGACGAGCACCCGTTGCCGGAAACGGTCGATTGCCTGCAGCAGCTGGTCG
CGGAGTATGTGAGCCACGTCACATCCGAGGCTTGTTTGGCGGCCGACCTC
AAAGGCAACCTGGACACCGAGTGCTTCGTCTTCACCGTCCGCCACGATAA
GCACAAGTTGAAGCGGGCCAACCACATCCGGGACACCGACCTGCACATCA
ACAACTGTACGCGCGCGCGCTTCACAGACGACAGCCTGTCCACCATCTTT
CACCCGTCGTTCGAAGCCGTGGCGCCACCACAGCAGACGATACCGGCTTC
AGACGGGGTTGCAGGGGGGGGCAAGGAGACTCTCTGAGCGGCCGACCTCA
AAGGCAACCTGGACACCGAGTGCTTCGTCTTCACCGTCCGCCACGATAAG
CACAAGTTGAAGCGGGCCAACCACATCCGGGACACCGACCTGCACATCAA
CAACTGTACGCGCGCGCGCTTCACAGACGACAGCCTGTCCACCATCTTTC
ACCCGTCGTTCGAAGCCGTGGCGCCACCACAGCAGACGATACCGGCTTCA
GACGGGGTTGCAGGGGGGGGCAAGGAGACTCTCTGA
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