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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: D8LPK9_ECTSI (EsV-1-147 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK9_ECTSI) HSP 1 Score: 372 bits (954), Expect = 7.600e-123 Identity = 196/272 (72.06%), Postives = 220/272 (80.88%), Query Frame = 2 Query: 29 GKGSRGSSTRKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-----WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIMERIQTKYMNDWSSSDFD 829
G+ G ++IVNDIFR+LVAQEAD IKVQIEVTV+MGDFTGHDHVFEIVIPN + VRSDCDELV +DGIFLD KRTLFQ NMISAI+RRY AE+LVGVEGQE E+LHAFGKCALDILRLTYIILTDLDSDSPWVTTP V++LK++ FV+MR++ VQRTPIDYF EYMEYLA G NPVSSELMA+ILRLF FSSE LG ET KLAKTVH+ASEAKGLLF P D L R+ PH +MER+QT+YM DWSS DF+
Sbjct: 172 GERVEGIFYQEIVNDIFRVLVAQEADDIKVQIEVTVQMGDFTGHDHVFEIVIPNKLMR-VRSDCDELVNVDGIFLDTKRTLFQKNMISAIHRRYMAEALVGVEGQEFEALHAFGKCALDILRLTYIILTDLDSDSPWVTTPIDVHRLKWNLFVEMRKTADFVQRTPIDYFVEYMEYLAPCIDRSGVGAFRLERNPVSSELMAEILRLFSNFSSEFLGRETAKLAKTVHDASEAKGLLFKPVDLLVRQIPPHKRMMERMQTRYMEDWSSRDFE 442
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: Q8QND5_ESV1K (EsV-1-147 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND5_ESV1K) HSP 1 Score: 201 bits (511), Expect = 3.810e-55 Identity = 121/274 (44.16%), Postives = 166/274 (60.58%), Query Frame = 2 Query: 56 RKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-------------WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIM---ERIQTKYMNDWSSSDFD 829
++IV++IF I VA E K+Q+EV +MGDF GHDHV EI+ + T+ R DC +LVK++GIF+D K+ LF NM+S +R + L + GQE ES HAFGKCALD+LRLTYIILTDLDS SPWVTTP + + V++ S TPI YF YM ++A + ++NP +S LM +ILRLF + SS L ET KL+K + E SE++ LF RD R + +T+++ +RI+ K N+W+ DFD
Sbjct: 278 QEIVDEIFLIRVAHENINTKIQVEVRGQMGDFVGHDHVLEIIF-DQTKLESRIDCGDLVKVNGIFVDSKKNLFHMNMMSGFSRLTLGKELSDIPGQESESHHAFGKCALDVLRLTYIILTDLDSASPWVTTPVYDRAIS----VELPISFKGTAMTPISYFIVYMAFMAPCVDRSGVGRFQLHDDVTVEGSVNPRASVLMGEILRLFSELSSTTLKEETAKLSKIIQEGSESRTQLF--RD----RGRDNTMLINKADRIKQKQTNEWALRDFD 540
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.540e-26 Identity = 68/174 (39.08%), Postives = 104/174 (59.77%), Query Frame = 2 Query: 59 KIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFH---VNKLKYSSFVDMRESEYSV---QRTPIDYFAEYMEYLA 562
++V D F +++ E DL+KVQ+EV ++G G DHVFE++ P + S C+ + I G+F+ K+ LF NM S I R + + + HA GKCA D+LRLTYIILTDLD++ WV TP + V +L + +++ Y+ ++TPI+YFA+YM+Y+A
Sbjct: 210 EVVGDHFLLVIVDEVDLLKVQVEVRAKLGSVVGVDHVFELIFPVEDWLS-DGRCEPMEHIGGLFVPPKKELFFQNMTSGIERARLSRHATWLA----DKYHAVGKCAQDVLRLTYIILTDLDAEKSWVNTPAYDDVVAQLPRTHELNLAAGRYAWAFHKQTPIEYFAQYMKYMA 378
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 771 |
| Model size | 1017 |
| Exons | 2 |
| Ec32 ortholog | Ec-06_005020.1 |
| Ec32 ortholog description | EsV-1-147 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10659.467.1 >prot_E-siliculosus-1a_F_contig10659.467.1 ID=prot_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=257bp
MGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMI
SAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPW
VTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLAWGGSVLTKT
LNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRD
FLERRNQPHTIIMERIQTKYMNDWSSSDFDGNSTWVCFRRGGARCTSPLT
TTFPTS* back to topmRNA from alignment at E-siliculosus-1a_F_contig10659:264..1297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCTTCTTAAGTTGACGGTAATGATGGGGGAAAGGATCGAGGGGATCTT
CTACCAGAAAAATCGTGAACGACATATTCCGCATTCTTGTTGCGCAAGAG
GCCGACCTCATCAAGGTTCAGATCGAGGTGACCGTCGAGATGGGTGATTT
CACGGGACACGATCACGTATTCGAGATCGTAATTCCGAACGACACGGAGA
AGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAGACGGCATCTTC
CTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATCTCCGCCATAAA
CAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGGACAGGAGATGG
AGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATACTGAGGCTGACG
TACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGGGTAACGACCCC
TTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGATATGAGGGAGT
CTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTGCCGAGTACATG
GAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACGTCTTGTTAAAC
AACAGCTTGAACCCTGTTTCGTCCGAACTGATGGCGGATATACTGCGCCT
TTTTTTTAAATTTTCCTCGGAGATTCTGGGGAGCGAAACAAGGAAGCTAG
CCAAGACAGTTCACGAGGCCTCGGAAGCGAAAGGGCTCCTGTTTAACCCT
CGTGATTTTCTGGAACGTCGGAACCAACCCCATACAATAATCATGGAGAG
GATACAGACGAAGTACATGAACGATTGGTCCAGCTCGGATTTCGACGGGA
ATTCTACATGGGTCTGTTTCAGAAGAGGAGGGGCAAGATGTACGTCACCC
TTGACGACAACATTCCCCACGTCGTAGAACGCTACTACCTGAAGAGAACC
AGGATACACTTTGTCCTCGACGATGGGAGCAGTGTCAGCGTCGGTTCTTT
CGAGTTCAATGGTAAGGTCCTGGACACCATACGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10659:264..1297+ >mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGTGATTTCACGGGACACGATCACGTATTCGAGATCGTAATTCCGAA
CGACACGGAGAAGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAG
ACGGCATCTTCCTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATC
TCCGCCATAAACAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGG
ACAGGAGATGGAGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATAC
TGAGGCTGACGTACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGG
GTAACGACCCCTTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGA
TATGAGGGAGTCTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTG
CCGAGTACATGGAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACA
TGGGTGATTTCACGGGACACGATCACGTATTCGAGATCGTAATTCCGAAC
GACACGGAGAAGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAGA
CGGCATCTTCCTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATCT
CCGCCATAAACAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGGA
CAGGAGATGGAGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATACT
GAGGCTGACGTACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGGG
TAACGACCCCTTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGAT
ATGAGGGAGTCTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTGC
CGAGTACATGGAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACCT
TGAACCCTGTTTCGTCCGAACTGATGGCGGATATACTGCGCCTTTTTTTT
AAATTTTCCTCGGAGATTCTGGGGAGCGAAACAAGGAAGCTAGCCAAGAC
AGTTCACGAGGCCTCGGAAGCGAAAGGGCTCCTGTTTAACCCTCGTGATT
TTCTGGAACGTCGGAACCAACCCCATACAATAATCATGGAGAGGATACAG
ACGAAGTACATGAACGATTGGTCCAGCTCGGATTTCGACGGGAATTCTAC
ATGGGTCTGTTTCAGAAGAGGAGGGGCAAGATGTACGTCACCCTTGACGA
CAACATTCCCCACGTCGTAGCTTGAACCCTGTTTCGTCCGAACTGATGGC
GGATATACTGCGCCTTTTTTTTAAATTTTCCTCGGAGATTCTGGGGAGCG
AAACAAGGAAGCTAGCCAAGACAGTTCACGAGGCCTCGGAAGCGAAAGGG
CTCCTGTTTAACCCTCGTGATTTTCTGGAACGTCGGAACCAACCCCATAC
AATAATCATGGAGAGGATACAGACGAAGTACATGAACGATTGGTCCAGCT
CGGATTTCGACGGGAATTCTACATGGGTCTGTTTCAGAAGAGGAGGGGCA
AGATGTACGTCACCCTTGACGACAACATTCCCCACGTCGTAG back to top
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