mRNA_E-siliculosus-1a_F_contig10659.467.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10659.467.1
Unique NamemRNA_E-siliculosus-1a_F_contig10659.467.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: D8LPK9_ECTSI (EsV-1-147 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK9_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 7.600e-123
Identity = 196/272 (72.06%), Postives = 220/272 (80.88%), Query Frame = 2 
Query:   29 GKGSRGSSTRKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-----WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIMERIQTKYMNDWSSSDFD 829
            G+   G   ++IVNDIFR+LVAQEAD IKVQIEVTV+MGDFTGHDHVFEIVIPN   + VRSDCDELV +DGIFLD KRTLFQ NMISAI+RRY AE+LVGVEGQE E+LHAFGKCALDILRLTYIILTDLDSDSPWVTTP  V++LK++ FV+MR++   VQRTPIDYF EYMEYLA      G        NPVSSELMA+ILRLF  FSSE LG ET KLAKTVH+ASEAKGLLF P D L R+  PH  +MER+QT+YM DWSS DF+
Sbjct:  172 GERVEGIFYQEIVNDIFRVLVAQEADDIKVQIEVTVQMGDFTGHDHVFEIVIPNKLMR-VRSDCDELVNVDGIFLDTKRTLFQKNMISAIHRRYMAEALVGVEGQEFEALHAFGKCALDILRLTYIILTDLDSDSPWVTTPIDVHRLKWNLFVEMRKTADFVQRTPIDYFVEYMEYLAPCIDRSGVGAFRLERNPVSSELMAEILRLFSNFSSEFLGRETAKLAKTVHDASEAKGLLFKPVDLLVRQIPPHKRMMERMQTRYMEDWSSRDFE 442
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: Q8QND5_ESV1K (EsV-1-147 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND5_ESV1K)

HSP 1 Score: 201 bits (511), Expect = 3.810e-55
Identity = 121/274 (44.16%), Postives = 166/274 (60.58%), Query Frame = 2 
Query:   56 RKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-------------WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIM---ERIQTKYMNDWSSSDFD 829
            ++IV++IF I VA E    K+Q+EV  +MGDF GHDHV EI+  + T+   R DC +LVK++GIF+D K+ LF  NM+S  +R    + L  + GQE ES HAFGKCALD+LRLTYIILTDLDS SPWVTTP +   +     V++  S      TPI YF  YM ++A                  +  ++NP +S LM +ILRLF + SS  L  ET KL+K + E SE++  LF  RD    R + +T+++   +RI+ K  N+W+  DFD
Sbjct:  278 QEIVDEIFLIRVAHENINTKIQVEVRGQMGDFVGHDHVLEIIF-DQTKLESRIDCGDLVKVNGIFVDSKKNLFHMNMMSGFSRLTLGKELSDIPGQESESHHAFGKCALDVLRLTYIILTDLDSASPWVTTPVYDRAIS----VELPISFKGTAMTPISYFIVYMAFMAPCVDRSGVGRFQLHDDVTVEGSVNPRASVLMGEILRLFSELSSTTLKEETAKLSKIIQEGSESRTQLF--RD----RGRDNTMLINKADRIKQKQTNEWALRDFD 540
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BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.540e-26
Identity = 68/174 (39.08%), Postives = 104/174 (59.77%), Query Frame = 2 
Query:   59 KIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFH---VNKLKYSSFVDMRESEYSV---QRTPIDYFAEYMEYLA 562
            ++V D F +++  E DL+KVQ+EV  ++G   G DHVFE++ P +   S    C+ +  I G+F+  K+ LF  NM S I R   +     +     +  HA GKCA D+LRLTYIILTDLD++  WV TP +   V +L  +  +++    Y+    ++TPI+YFA+YM+Y+A
Sbjct:  210 EVVGDHFLLVIVDEVDLLKVQVEVRAKLGSVVGVDHVFELIFPVEDWLS-DGRCEPMEHIGGLFVPPKKELFFQNMTSGIERARLSRHATWLA----DKYHAVGKCAQDVLRLTYIILTDLDAEKSWVNTPAYDDVVAQLPRTHELNLAAGRYAWAFHKQTPIEYFAQYMKYMA 378
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPK9_ECTSI7.600e-12372.06EsV-1-147 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND5_ESV1K3.810e-5544.16EsV-1-147 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JW74_9PHAE2.540e-2639.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10659contigE-siliculosus-1a_F_contig10659:264..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size771
Model size1017
Exons2
Ec32 orthologEc-06_005020.1
Ec32 ortholog descriptionEsV-1-147
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10659.467.1prot_E-siliculosus-1a_F_contig10659.467.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10659 403..1190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.9622004-UTR-E-siliculosus-1a_F_contig10659:263..4021622927565.9622004-UTR-E-siliculosus-1a_F_contig10659:263..402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10659 264..402 +
1696318589.067629-UTR-E-siliculosus-1a_F_contig10659:263..4021696318589.067629-UTR-E-siliculosus-1a_F_contig10659:263..402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10659 264..402 +
1622927565.9934766-UTR-E-siliculosus-1a_F_contig10659:1190..12971622927565.9934766-UTR-E-siliculosus-1a_F_contig10659:1190..1297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10659 1191..1297 +
1696318589.110105-UTR-E-siliculosus-1a_F_contig10659:1190..12971696318589.110105-UTR-E-siliculosus-1a_F_contig10659:1190..1297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10659 1191..1297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.9720778-CDS-E-siliculosus-1a_F_contig10659:402..8511622927565.9720778-CDS-E-siliculosus-1a_F_contig10659:402..851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 403..851 +
1696318589.082148-CDS-E-siliculosus-1a_F_contig10659:402..8511696318589.082148-CDS-E-siliculosus-1a_F_contig10659:402..851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 403..851 +
1622927565.981553-CDS-E-siliculosus-1a_F_contig10659:868..11901622927565.981553-CDS-E-siliculosus-1a_F_contig10659:868..1190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 869..1190 +
1696318589.101016-CDS-E-siliculosus-1a_F_contig10659:868..11901696318589.101016-CDS-E-siliculosus-1a_F_contig10659:868..1190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10659 869..1190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10659.467.1

>prot_E-siliculosus-1a_F_contig10659.467.1 ID=prot_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=257bp
MGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMI
SAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPW
VTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLAWGGSVLTKT
LNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRD
FLERRNQPHTIIMERIQTKYMNDWSSSDFDGNSTWVCFRRGGARCTSPLT
TTFPTS*
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mRNA from alignment at E-siliculosus-1a_F_contig10659:264..1297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCTTCTTAAGTTGACGGTAATGATGGGGGAAAGGATCGAGGGGATCTT
CTACCAGAAAAATCGTGAACGACATATTCCGCATTCTTGTTGCGCAAGAG
GCCGACCTCATCAAGGTTCAGATCGAGGTGACCGTCGAGATGGGTGATTT
CACGGGACACGATCACGTATTCGAGATCGTAATTCCGAACGACACGGAGA
AGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAGACGGCATCTTC
CTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATCTCCGCCATAAA
CAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGGACAGGAGATGG
AGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATACTGAGGCTGACG
TACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGGGTAACGACCCC
TTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGATATGAGGGAGT
CTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTGCCGAGTACATG
GAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACGTCTTGTTAAAC
AACAGCTTGAACCCTGTTTCGTCCGAACTGATGGCGGATATACTGCGCCT
TTTTTTTAAATTTTCCTCGGAGATTCTGGGGAGCGAAACAAGGAAGCTAG
CCAAGACAGTTCACGAGGCCTCGGAAGCGAAAGGGCTCCTGTTTAACCCT
CGTGATTTTCTGGAACGTCGGAACCAACCCCATACAATAATCATGGAGAG
GATACAGACGAAGTACATGAACGATTGGTCCAGCTCGGATTTCGACGGGA
ATTCTACATGGGTCTGTTTCAGAAGAGGAGGGGCAAGATGTACGTCACCC
TTGACGACAACATTCCCCACGTCGTAGAACGCTACTACCTGAAGAGAACC
AGGATACACTTTGTCCTCGACGATGGGAGCAGTGTCAGCGTCGGTTCTTT
CGAGTTCAATGGTAAGGTCCTGGACACCATACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10659:264..1297+

>mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGTGATTTCACGGGACACGATCACGTATTCGAGATCGTAATTCCGAA
CGACACGGAGAAGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAG
ACGGCATCTTCCTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATC
TCCGCCATAAACAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGG
ACAGGAGATGGAGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATAC
TGAGGCTGACGTACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGG
GTAACGACCCCTTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGA
TATGAGGGAGTCTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTG
CCGAGTACATGGAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACA
TGGGTGATTTCACGGGACACGATCACGTATTCGAGATCGTAATTCCGAAC
GACACGGAGAAGAGCGTCCGCAGCGACTGCGACGAGCTCGTCAAGATAGA
CGGCATCTTCCTCGATGAGAAACGAACGCTCTTCCAGAACAACATGATCT
CCGCCATAAACAGGAGATACGGGGCAGAATCCTTGGTTGGTGTGGAAGGA
CAGGAGATGGAGTCTCTTCACGCGTTCGGGAAGTGTGCCCTCGACATACT
GAGGCTGACGTACATCATCCTCACGGACCTGGATTCCGATTCTCCCTGGG
TAACGACCCCTTTTCACGTAAACAAGTTGAAGTACTCGTCGTTCGTAGAT
ATGAGGGAGTCTGAATATTCTGTTCAAAGGACGCCGATAGATTATTTTGC
CGAGTACATGGAGTACCTGGCGTGGGGAGGTTCCGTCTTGACAAAGACCT
TGAACCCTGTTTCGTCCGAACTGATGGCGGATATACTGCGCCTTTTTTTT
AAATTTTCCTCGGAGATTCTGGGGAGCGAAACAAGGAAGCTAGCCAAGAC
AGTTCACGAGGCCTCGGAAGCGAAAGGGCTCCTGTTTAACCCTCGTGATT
TTCTGGAACGTCGGAACCAACCCCATACAATAATCATGGAGAGGATACAG
ACGAAGTACATGAACGATTGGTCCAGCTCGGATTTCGACGGGAATTCTAC
ATGGGTCTGTTTCAGAAGAGGAGGGGCAAGATGTACGTCACCCTTGACGA
CAACATTCCCCACGTCGTAGCTTGAACCCTGTTTCGTCCGAACTGATGGC
GGATATACTGCGCCTTTTTTTTAAATTTTCCTCGGAGATTCTGGGGAGCG
AAACAAGGAAGCTAGCCAAGACAGTTCACGAGGCCTCGGAAGCGAAAGGG
CTCCTGTTTAACCCTCGTGATTTTCTGGAACGTCGGAACCAACCCCATAC
AATAATCATGGAGAGGATACAGACGAAGTACATGAACGATTGGTCCAGCT
CGGATTTCGACGGGAATTCTACATGGGTCTGTTTCAGAAGAGGAGGGGCA
AGATGTACGTCACCCTTGACGACAACATTCCCCACGTCGTAG
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