Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)
HSP 1 Score: 236 bits (603), Expect = 5.410e-64
Identity = 121/165 (73.33%), Postives = 131/165 (79.39%), Query Frame = 2
Query: 665 IENETARGSVGG--HILKD---KALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALP 1144
+ N +RG V G H+ D K VSTVCGFCG VGCRSTIHDPPG+ARPLVHSTCPSAPRSDARQEAVALNL SA+A SDTSPCTNMVLKC CSQD YIW YGM +HVTRCH+ ++LVA GT D+FKEA TISESEKAKVL K KAGRPRRR QGN P
Sbjct: 1062 VGNTDSRGIVVGDCHVGGDPGNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)
HSP 1 Score: 212 bits (539), Expect = 3.200e-62
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 2
Query: 917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEE 1231
MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNM+GTRSLEDMGEE
Sbjct: 1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLEDMGEE 105
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)
HSP 1 Score: 207 bits (526), Expect = 2.260e-56
Identity = 102/129 (79.07%), Postives = 108/129 (83.72%), Query Frame = 2
Query: 695 GGHILKDKALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAK 1081
GGHILKDK VST CGFCG VG +TIHDPPGKARPLVHSTCPSAPRSDARQEAVALNL SA+AGSDTS CTNMV KC FCSQ YIWKY MS+H+TRCH+ D+LVA GT D FKE TISESEKAK
Sbjct: 403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADNFKETCTISESEKAK 528
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)
HSP 1 Score: 174 bits (440), Expect = 7.530e-48
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 2
Query: 917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEEE 1234
MVLKC CSQ+ YIWKYGMSEHVTR H+ED+ VAAGT VD+FKEAY+ISESEKAK L KFKAG+PR+RGQGNE LP GALG TEGNG GRNMAGTRSLEDMGEE+
Sbjct: 1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLEDMGEED 106
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
A0A6H5J9C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C9_9PHAE)
HSP 1 Score: 62.0 bits (149), Expect = 1.040e-7
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 2
Query: 1100 AGRPRRRGQGNEALPTGALGSTEGNG-TFGRNMAGTRSLEDMGEEE 1234
AG+P RRGQGNE +P G LGS E NG GR M GTRSLEDMGEEE
Sbjct: 10 AGKPLRRGQGNEVVPPGTLGSAERNGGASGRKMVGTRSLEDMGEEE 55
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match:
A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY)
HSP 1 Score: 57.4 bits (137), Expect = 7.140e-5
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 2
Query: 692 VGGHILKDKAL-QVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDT-YIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPR 1114
+G HIL D + + ST CGFC ++ G+ + R A+ L++ + SPCTN+ ++C C +D +WKY +S H+ R HR+D V+ F + +S +E A+ ++K + +PR
Sbjct: 1424 IGAHILFDSRIDRSSTPCGFCLSTADTCAVYLKRGQGARRGERLDYNKSRCPAKYT---LSITRTSQPAARSPCTNVPMRCSLCPKDAPAVWKYNLSSHLLRAHRQD------PEVEPFASLWRLSPTEVAR-MEKLYSAKPR 1556
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 6
0 1 Expect = 5.41e-64 / Id = 73.33 Expect = 3.20e-62 / Id = 99.05 Expect = 2.26e-56 / Id = 79.07 Expect = 7.53e-48 / Id = 80.19 Expect = 1.04e-7 / Id = 71.74 Expect = 7.14e-5 / Id = 27.97 Sequence A0A6H5K6M3_9PHAE D7FNW9_ECTSI A0A6H5L2E6_9PHAE A0A6H5K5R3_9PHAE A0A6H5J9C9_9PHAE A0A371DN83_9APHY back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10650.463.1
>prot_E-siliculosus-1a_F_contig10650.463.1 ID=prot_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MLVATPGRSPAQYALGLFSCTKAPSEEQAQDGAVVKGRLMKLQWSSVAPA back to top mRNA from alignment at E-siliculosus-1a_F_contig10650:163..2035+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1873bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GCT ATGTTGGTGGCGACCCCGGGAAGGAGCCCAGCCCAGTACGCCCTGGG
CTTGTTCTCTTGCACGAAGGCCCCATCGGAGGAGCAGGCGCAAGATGGGG
CTGTTGTCAAGGGTAGATTGATGAAGCTGCAATGGTCCAGTGTGGCGCCT
GCAATTGCTGCAGTTCGGCTGGAAGAGGGCGACGGAACTCCCTCTTCAGA
TATCGGTGAGGACGGTACGCCAGCTACGGGCTCGTGGCAACACTGGGGAG
AACTGGGACTCCACAAAGGGGAGCTATCGTGCAAGTGTCGCCTCGTTTTG
CCGTTGGATCCCGACGTAGCCGTGACACCTGTCGTGGTCAAAGAGACCGT
GACACGCACTGTCCTCCGCGAGGGGCCGATGGTGCAGGAGCAAGTGGAGA
TCGAGAAGAAGAGTGTGGACCGAACCTCGTTTCGATTTGAACTTGCCGAC
CTCACCGCCGTGAAAGATATTCTCGTGGACGAGGTCGACGCTCTGAGCGC
TTGGCGACACCTTCCCGCGCAGAAAACGTCTGGCGAGACGCCAATCCCCT
ACCACTCCACGAGGACCTGTTTCATGTTCAGGCTGGCGCATTGGGCGTGG
CCCCGTCGGGGGGACTGGGCTCCGAGAAGATCTGCTGCAAACTCTGCACG
AGAGAAGTTCAACGATCGAAAATGA GACTGCACGTGGGAGCGTGGGAGGT
CACATTTTGAAGGACAAG GTGCGGGTGTTCTTAATTTTTTTTGGCATGGG
AATGCAAGACCGGGTGAGATTCAACCTGTTTGATACTGCTGTAGTGTGCA
TGGCTTGTTATTTTTCATTAGCATCGTATAGACTTCACCTGCGTGGCCTG
CTTCACCCTGTCCCCTGTGTTATTATTTCGCGAGATGTTGGGCAACGGTG
CTTACCGGACGCGCGTGGACTCATGCCGCATATTTCAATCCGGCGTGGAA
ATGTCAGCGGCACGCTCACGATCCATCCTCTCTCCCTTTTTGTTGTAGGC
TTTGCAAGTGAGCACTGTCTGTGGCTTCTGTGGTGAGGTCGGGTGCCGCA
GCACCATCCATGATCCACCAGGCAAGGCCAGGCCCCTGGTGCACTCGACC
TGTCCATCAGCGCCTCGGAGCGACGCACGCCAGGAAGCCGTAGCTCTGAA
CCTGGGCAGTGCGAAGGCGGGCTCAGATACCTCACCGTGCACCAACATGG
TCTTGAAGTGCCTCTTCTGCTCCCAGGACACCTACATCTGGAAGTATGGC
ATGTCCGAGCACGTCACGAGATGCCACCGGGAGGACATACTTGTGGCGGC
GGGTACGACGGTAGATAGGTTCAAGGAAGCCTACACTATCTCGGAGAGCG
AGAAGGCCAAGGTACTCCAAAAATTTAAAGCCGGGAGGCCTCGCCGACGT
GGTCAAGGAAACGAAGCCCTCCCCACTGGCGCACTTGGGAGCACGGAAGG
GAACGGCACATTTGGCCGTAACATGGCCGGCACCCGGTCCTTGGAGGACA
TGGGCGAGGAGGAAGAGGAGGAGGACGAGGACGAGGGCGAGGAGAATAAG
ACAAAGACGACGACGACGACGACGAGGAACAAGACGACGACGACGACGAC
GACGACGACGACGACGACGACGAGGACGACGACGACGACGACGAAGACGA
CGACGGCGACGACGAAGACGACGACGACGAAGACGAAGAGGAGGAAGAAG
TAGAAGAGGAAGAAAGGCGGGCAGGGGGGGTGGAAGGCAAACAAAGCAAA
AAGCGACCGGCTCGCAGAAAACGTAGCGAGATACCGCGCGAGAACTCGGG
AGTAGGGGTCCGCGTGAGTAAGCGGGGTAGAGTGATCAAGAAAAACGTAA
CCCTACAAGACCAAGGCTACTCG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10650:163..2035+
>mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top