mRNA_E-siliculosus-1a_F_contig10650.463.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10650.463.1
Unique NamemRNA_E-siliculosus-1a_F_contig10650.463.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 5.410e-64
Identity = 121/165 (73.33%), Postives = 131/165 (79.39%), Query Frame = 2 
Query:  665 IENETARGSVGG--HILKD---KALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALP 1144
            + N  +RG V G  H+  D   K   VSTVCGFCG VGCRSTIHDPPG+ARPLVHSTCPSAPRSDARQEAVALNL SA+A SDTSPCTNMVLKC  CSQD YIW YGM +HVTRCH+ ++LVA GT  D+FKEA TISESEKAKVL K KAGRPRRR QGN   P
Sbjct: 1062 VGNTDSRGIVVGDCHVGGDPGNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.200e-62
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 2 
Query:  917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEE 1231
            MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNM+GTRSLEDMGEE
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLEDMGEE 105
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 2.260e-56
Identity = 102/129 (79.07%), Postives = 108/129 (83.72%), Query Frame = 2 
Query:  695 GGHILKDKALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAK 1081
            GGHILKDK   VST CGFCG VG  +TIHDPPGKARPLVHSTCPSAPRSDARQEAVALNL SA+AGSDTS CTNMV KC FCSQ  YIWKY MS+H+TRCH+ D+LVA GT  D FKE  TISESEKAK
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADNFKETCTISESEKAK 528
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 7.530e-48
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 2 
Query:  917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEEE 1234
            MVLKC  CSQ+ YIWKYGMSEHVTR H+ED+ VAAGT VD+FKEAY+ISESEKAK L KFKAG+PR+RGQGNE LP GALG TEGNG  GRNMAGTRSLEDMGEE+
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLEDMGEED 106
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5J9C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-7
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 2 
Query: 1100 AGRPRRRGQGNEALPTGALGSTEGNG-TFGRNMAGTRSLEDMGEEE 1234
            AG+P RRGQGNE +P G LGS E NG   GR M GTRSLEDMGEEE
Sbjct:   10 AGKPLRRGQGNEVVPPGTLGSAERNGGASGRKMVGTRSLEDMGEEE 55
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BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY)

HSP 1 Score: 57.4 bits (137), Expect = 7.140e-5
Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 2 
Query:  692 VGGHILKDKAL-QVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDT-YIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPR 1114
            +G HIL D  + + ST CGFC        ++   G+          +  R  A+     L++      +  SPCTN+ ++C  C +D   +WKY +S H+ R HR+D        V+ F   + +S +E A+ ++K  + +PR
Sbjct: 1424 IGAHILFDSRIDRSSTPCGFCLSTADTCAVYLKRGQGARRGERLDYNKSRCPAKYT---LSITRTSQPAARSPCTNVPMRCSLCPKDAPAVWKYNLSSHLLRAHRQD------PEVEPFASLWRLSPTEVAR-MEKLYSAKPR 1556
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE5.410e-6473.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI3.200e-6299.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2E6_9PHAE2.260e-5679.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R3_9PHAE7.530e-4880.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C9_9PHAE1.040e-771.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A371DN83_9APHY7.140e-527.97PHD domain-containing protein n=1 Tax=Polyporus br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10650contigE-siliculosus-1a_F_contig10650:163..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size1593
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10650.463.1prot_E-siliculosus-1a_F_contig10650.463.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10650 166..837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.6854782-UTR-E-siliculosus-1a_F_contig10650:162..1651622927565.6854782-UTR-E-siliculosus-1a_F_contig10650:162..165Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 163..165 +
1696318588.9490247-UTR-E-siliculosus-1a_F_contig10650:162..1651696318588.9490247-UTR-E-siliculosus-1a_F_contig10650:162..165Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 163..165 +
1622927565.7112703-UTR-E-siliculosus-1a_F_contig10650:837..8801622927565.7112703-UTR-E-siliculosus-1a_F_contig10650:837..880Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 838..880 +
1696318588.9800622-UTR-E-siliculosus-1a_F_contig10650:837..8801696318588.9800622-UTR-E-siliculosus-1a_F_contig10650:837..880Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 838..880 +
1622927565.724053-UTR-E-siliculosus-1a_F_contig10650:1160..20351622927565.724053-UTR-E-siliculosus-1a_F_contig10650:1160..2035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 1161..2035 +
1696318588.992736-UTR-E-siliculosus-1a_F_contig10650:1160..20351696318588.992736-UTR-E-siliculosus-1a_F_contig10650:1160..2035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10650 1161..2035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.6987488-CDS-E-siliculosus-1a_F_contig10650:165..8371622927565.6987488-CDS-E-siliculosus-1a_F_contig10650:165..837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10650 166..837 +
1696318588.9566956-CDS-E-siliculosus-1a_F_contig10650:165..8371696318588.9566956-CDS-E-siliculosus-1a_F_contig10650:165..837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10650 166..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10650.463.1

>prot_E-siliculosus-1a_F_contig10650.463.1 ID=prot_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MLVATPGRSPAQYALGLFSCTKAPSEEQAQDGAVVKGRLMKLQWSSVAPA
IAAVRLEEGDGTPSSDIGEDGTPATGSWQHWGELGLHKGELSCKCRLVLP
LDPDVAVTPVVVKETVTRTVLREGPMVQEQVEIEKKSVDRTSFRFELADL
TAVKDILVDEVDALSAWRHLPAQKTSGETPIPYHSTRTCFMFRLAHWAWP
RRGDWAPRRSAANSAREKFNDRK*
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mRNA from alignment at E-siliculosus-1a_F_contig10650:163..2035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1873bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTATGTTGGTGGCGACCCCGGGAAGGAGCCCAGCCCAGTACGCCCTGGG
CTTGTTCTCTTGCACGAAGGCCCCATCGGAGGAGCAGGCGCAAGATGGGG
CTGTTGTCAAGGGTAGATTGATGAAGCTGCAATGGTCCAGTGTGGCGCCT
GCAATTGCTGCAGTTCGGCTGGAAGAGGGCGACGGAACTCCCTCTTCAGA
TATCGGTGAGGACGGTACGCCAGCTACGGGCTCGTGGCAACACTGGGGAG
AACTGGGACTCCACAAAGGGGAGCTATCGTGCAAGTGTCGCCTCGTTTTG
CCGTTGGATCCCGACGTAGCCGTGACACCTGTCGTGGTCAAAGAGACCGT
GACACGCACTGTCCTCCGCGAGGGGCCGATGGTGCAGGAGCAAGTGGAGA
TCGAGAAGAAGAGTGTGGACCGAACCTCGTTTCGATTTGAACTTGCCGAC
CTCACCGCCGTGAAAGATATTCTCGTGGACGAGGTCGACGCTCTGAGCGC
TTGGCGACACCTTCCCGCGCAGAAAACGTCTGGCGAGACGCCAATCCCCT
ACCACTCCACGAGGACCTGTTTCATGTTCAGGCTGGCGCATTGGGCGTGG
CCCCGTCGGGGGGACTGGGCTCCGAGAAGATCTGCTGCAAACTCTGCACG
AGAGAAGTTCAACGATCGAAAATGAGACTGCACGTGGGAGCGTGGGAGGT
CACATTTTGAAGGACAAGGTGCGGGTGTTCTTAATTTTTTTTGGCATGGG
AATGCAAGACCGGGTGAGATTCAACCTGTTTGATACTGCTGTAGTGTGCA
TGGCTTGTTATTTTTCATTAGCATCGTATAGACTTCACCTGCGTGGCCTG
CTTCACCCTGTCCCCTGTGTTATTATTTCGCGAGATGTTGGGCAACGGTG
CTTACCGGACGCGCGTGGACTCATGCCGCATATTTCAATCCGGCGTGGAA
ATGTCAGCGGCACGCTCACGATCCATCCTCTCTCCCTTTTTGTTGTAGGC
TTTGCAAGTGAGCACTGTCTGTGGCTTCTGTGGTGAGGTCGGGTGCCGCA
GCACCATCCATGATCCACCAGGCAAGGCCAGGCCCCTGGTGCACTCGACC
TGTCCATCAGCGCCTCGGAGCGACGCACGCCAGGAAGCCGTAGCTCTGAA
CCTGGGCAGTGCGAAGGCGGGCTCAGATACCTCACCGTGCACCAACATGG
TCTTGAAGTGCCTCTTCTGCTCCCAGGACACCTACATCTGGAAGTATGGC
ATGTCCGAGCACGTCACGAGATGCCACCGGGAGGACATACTTGTGGCGGC
GGGTACGACGGTAGATAGGTTCAAGGAAGCCTACACTATCTCGGAGAGCG
AGAAGGCCAAGGTACTCCAAAAATTTAAAGCCGGGAGGCCTCGCCGACGT
GGTCAAGGAAACGAAGCCCTCCCCACTGGCGCACTTGGGAGCACGGAAGG
GAACGGCACATTTGGCCGTAACATGGCCGGCACCCGGTCCTTGGAGGACA
TGGGCGAGGAGGAAGAGGAGGAGGACGAGGACGAGGGCGAGGAGAATAAG
ACAAAGACGACGACGACGACGACGAGGAACAAGACGACGACGACGACGAC
GACGACGACGACGACGACGACGAGGACGACGACGACGACGACGAAGACGA
CGACGGCGACGACGAAGACGACGACGACGAAGACGAAGAGGAGGAAGAAG
TAGAAGAGGAAGAAAGGCGGGCAGGGGGGGTGGAAGGCAAACAAAGCAAA
AAGCGACCGGCTCGCAGAAAACGTAGCGAGATACCGCGCGAGAACTCGGG
AGTAGGGGTCCGCGTGAGTAAGCGGGGTAGAGTGATCAAGAAAAACGTAA
CCCTACAAGACCAAGGCTACTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10650:163..2035+

>mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGGTGGCGACCCCGGGAAGGAGCCCAGCCCAGTACGCCCTGGGCTT
GTTCTCTTGCACGAAGGCCCCATCGGAGGAGCAGGCGCAAGATGGGGCTG
TTGTCAAGGGTAGATTGATGAAGCTGCAATGGTCCAGTGTGGCGCCTGCA
ATTGCTGCAGTTCGGCTGGAAGAGGGCGACGGAACTCCCTCTTCAGATAT
CGGTGAGGACGGTACGCCAGCTACGGGCTCGTGGCAACACTGGGGAGAAC
TGGGACTCCACAAAGGGGAGCTATCGTGCAAGTGTCGCCTCGTTTTGCCG
TTGGATCCCGACGTAGCCGTGACACCTGTCGTGGTCAAAGAGACCGTGAC
ACGCACTGTCCTCCGCGAGGGGCCGATGGTGCAGGAGCAAGTGGAGATCG
AGAAGAAGAGTGTGGACCGAACCTCGTTTCGATTTGAACTTGCCGACCTC
ACCGCCGTGAAAGATATTCTCGTGGACGAGGTCGACGCTCTGAGCGCTTG
GCGACACCTTCCCGCGCAGAAAACGTCTGGCGAGACGCCAATCCCCTACC
ACTCCACGAGGACCTGTTTCATGTTCAGGCTGGCGCATTGGGCGTGGCCC
CGTCGGGGGGACTGGGCTCCGAGAAGATCTGCTGCAAACTCTGCACGAGA
GAAGTTCAACGATCGAAAATGAATGTTGGTGGCGACCCCGGGAAGGAGCC
CAGCCCAGTACGCCCTGGGCTTGTTCTCTTGCACGAAGGCCCCATCGGAG
GAGCAGGCGCAAGATGGGGCTGTTGTCAAGGGTAGATTGATGAAGCTGCA
ATGGTCCAGTGTGGCGCCTGCAATTGCTGCAGTTCGGCTGGAAGAGGGCG
ACGGAACTCCCTCTTCAGATATCGGTGAGGACGGTACGCCAGCTACGGGC
TCGTGGCAACACTGGGGAGAACTGGGACTCCACAAAGGGGAGCTATCGTG
CAAGTGTCGCCTCGTTTTGCCGTTGGATCCCGACGTAGCCGTGACACCTG
TCGTGGTCAAAGAGACCGTGACACGCACTGTCCTCCGCGAGGGGCCGATG
GTGCAGGAGCAAGTGGAGATCGAGAAGAAGAGTGTGGACCGAACCTCGTT
TCGATTTGAACTTGCCGACCTCACCGCCGTGAAAGATATTCTCGTGGACG
AGGTCGACGCTCTGAGCGCTTGGCGACACCTTCCCGCGCAGAAAACGTCT
GGCGAGACGCCAATCCCCTACCACTCCACGAGGACCTGTTTCATGTTCAG
GCTGGCGCATTGGGCGTGGCCCCGTCGGGGGGACTGGGCTCCGAGAAGAT
CTGCTGCAAACTCTGCACGAGAGAAGTTCAACGATCGAAAATGA
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