Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE)
HSP 1 Score: 95.1 bits (235), Expect = 4.590e-21
Identity = 68/187 (36.36%), Postives = 71/187 (37.97%), Query Frame = 1
Query: 13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
+S+ +VVTGAGFPEWRRVRLLLSEDLGQHL RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP
Sbjct: 167 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLAAAGKELLCPPTAAPREAAEAXXXXXXXVVAGVGRTRDSTTGALGKEGVGGAGXXXXXXXXEEADARRKANSNAKVVKMVETHAAGEKEERGDASGKAKTATTVRGGESRKRERKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 353
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)
HSP 1 Score: 93.2 bits (230), Expect = 2.220e-20
Identity = 67/187 (35.83%), Postives = 70/187 (37.43%), Query Frame = 1
Query: 13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
+S+ +VVTGAGFPEWRRVRLLLSEDLGQHL RKVRVMHVSRPLMGGLSWAPEN GELDMITVDKYTAVLKSYP
Sbjct: 63 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLVAAGEKPLCPPTAAPREAAEXXXXXXXXVVAVGSRTRDSTTGALGKEDAGGAAVGDGGGETEEADARRKANSNAKVVKMVETNAAGEKEERGDASGKAKTSTTVRGKESRKRERKVRVMHVSRPLMGGLSWAPENAGELDMITVDKYTAVLKSYP 249
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A5D6Y6E5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6E5_9STRA)
HSP 1 Score: 74.3 bits (181), Expect = 9.380e-14
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + ++I VVTG GFPE R+VR+LLSE H ++V V+H+SRPL+GG++ PE+ E+D+ T + TA+L+++P
Sbjct: 68 NGKSVTIQGSHVVTGRGFPEPRKVRILLSEPREVHRQRVTVLHLSRPLVGGVA-LPEDPNEIDVATFRRVTAILRAFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A833TGC7_PHYIN (Regulator of chromosome condensation (RCC1) repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGC7_PHYIN)
HSP 1 Score: 73.9 bits (180), Expect = 1.270e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
D0NR99_PHYIT (VPS9 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NR99_PHYIT)
HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
V9F7P2_PHYPR (VPS9 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F7P2_PHYPR)
HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A225UX42_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UX42_9STRA)
HSP 1 Score: 72.8 bits (177), Expect = 3.180e-13
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 66 NGKQVAVLGSHIHTGKGFNDQRQVRILLSEKREIHHQEVTVLHISRPLAGGIE-VPEDPSEIDVATFRKYTAILRSFP 142
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A2P4YDT4_9STRA (VPS9 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDT4_9STRA)
HSP 1 Score: 72.0 bits (175), Expect = 6.090e-13
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 69 NGKQVAVLGSHIHTGRGFNDRRQVRILLSEKREIHHQEVTVLHISRPLEGGIE-VPEDPSEIDVATFRKYTAILRSFP 145
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL)
HSP 1 Score: 71.6 bits (174), Expect = 8.310e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +SI QV T GF E R+VR+LLSE H +++ ++H+SRPL+GG+ PE+ E+D+ T +YTA+L+S+P
Sbjct: 72 NGKTVSIIGSQVHTRRGFDEPRKVRILLSEQRDVHHQEIMLLHLSRPLIGGIV-LPEDPNEIDLATFRRYTAILRSFP 148
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match:
A0A6A3J236_9STRA (VPS9 domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J236_9STRA)
HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE L++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 67 NGKQVAVVGSHIHTGKGFKDRRQVRILLSEKREIQLQEVTVLHISRPLEGGIE-IPEDPSEIDVATFRKYTAILRSFP 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 21
0 1 Expect = 4.59e-21 / Id = 36.36 Expect = 2.22e-20 / Id = 35.83 Expect = 9.38e-14 / Id = 46.15 Expect = 1.27e-13 / Id = 44.87 Expect = 1.28e-13 / Id = 44.87 Expect = 1.28e-13 / Id = 44.87 Expect = 3.18e-13 / Id = 43.59 Expect = 6.09e-13 / Id = 43.59 Expect = 8.31e-13 / Id = 44.87 Expect = 1.01e-12 / Id = 43.59 Sequence A0A6H5JHA7_9PHAE D7FTN1_ECTSI A0A5D6Y6E5_9STRA A0A833TGC7_PHYIN D0NR99_PHYIT V9F7P2_PHYPR A0A225UX42_9STRA A0A2P4YDT4_9STRA A0A8K1CEM3_PYTOL A0A6A3J236_9STRA Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10644.458.1
>prot_E-siliculosus-1a_F_contig10644.458.1 ID=prot_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMG back to top mRNA from alignment at E-siliculosus-1a_F_contig10644:354..1400-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)AATGATAGGCATCTGTCGATTTTTCCCCAGCAGGTGGTGACTGGGGCTGG
ATTTCCAGAATGGAGGCGTGTGCGACTGCTGCTGTCAGAGGACCTCGGCC
AGCACCTC GTTGCGGCCGGGGAGCAACCGCTCCGTCCGCCCACGGCAGCT
CCCCGAGAAGCAGCTGAAGCCTCAGCGGAGGCGGCGGCCGAGGTGGTTGC
GGGGGGTAGTAGAACGCGCGATTCCACGACGGGGGCTCTGGGTAAGGAGG
ACGCCGGGGGTGCAGGGGTTGGTGATGGCGGCGGCGAGACGGTAGAAGCA
GATGCTCGAAGGAAGGCGAACTCCAACGCCAAGGTGGGAAAAATTGGCGG
GATTGCCGCCTGTCTGTCTTGTCTTCTTGTTGGCTGGTCTGTCGTCTGAT
TGGCTGTTTTCCTCGCTTGTGCGGCTTTTTCATGTCTTTTGTGCTTTTGG
TTAATTGACGGGGAGGGGGGGAAGGCGGTGTTTCTCACCGCTCCGTGCGT
CGGTCTGGCTTGTGTTGGACCACGTCGAGCGAAAGCCGGCTTTGGTCCTT
CTACTCCTTTGTAGGGGGGGCGGGGTGGTGAGTAGGCAAATATGGGCCAA
AGGAGGAGAGCGAGAGGAAGAGGTGCCCAAGGACATGGACGGCGAAGCGC
CGAAAAACACTACCACAAACTCTTTCCAGGCGTGCCTGCCACTTTCTTCT
TTAGTCTCACGATCGGCGCGTGTTGTCGGAGACGATGGCTTGGCGCTAAA
TAATCGCGAAACCACCGCGCATGGGTTACTCCAATACGCCCCTTTCGCAT
GACACAGGTGGTGAAGATAATCGAAACGAACGCCCCTGGTGAGAAGGAAG
AGCGGGGCGACGCAAGCCGCAAGGCCAAGACTGCCACCACCGTGAGAGGG
GGGGAGTCGAGAAAACGAGAGCGAAAGGTCAGGGTGATGCATGTCTCGAG
GCCGCTGATGGGAGGGCTGTCTTGGGCGCCCGAGAACACCGGGGAGCTGG
ACATGATCACCGTCGACAAGTACACGGCCGTCCTCAAGTCTTACCCT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10644:354..1400-
>mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top