mRNA_E-siliculosus-1a_F_contig10644.458.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10644.458.1
Unique NamemRNA_E-siliculosus-1a_F_contig10644.458.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.590e-21
Identity = 68/187 (36.36%), Postives = 71/187 (37.97%), Query Frame = 1 
Query:   13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            +S+   +VVTGAGFPEWRRVRLLLSEDLGQHL                                                                                                                 RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP
Sbjct:  167 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLAAAGKELLCPPTAAPREAAEAXXXXXXXVVAGVGRTRDSTTGALGKEGVGGAGXXXXXXXXEEADARRKANSNAKVVKMVETHAAGEKEERGDASGKAKTATTVRGGESRKRERKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 353
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.220e-20
Identity = 67/187 (35.83%), Postives = 70/187 (37.43%), Query Frame = 1 
Query:   13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            +S+   +VVTGAGFPEWRRVRLLLSEDLGQHL                                                                                                                 RKVRVMHVSRPLMGGLSWAPEN GELDMITVDKYTAVLKSYP
Sbjct:   63 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLVAAGEKPLCPPTAAPREAAEXXXXXXXXVVAVGSRTRDSTTGALGKEDAGGAAVGDGGGETEEADARRKANSNAKVVKMVETNAAGEKEERGDASGKAKTSTTVRGKESRKRERKVRVMHVSRPLMGGLSWAPENAGELDMITVDKYTAVLKSYP 249
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A5D6Y6E5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6E5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.380e-14
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + ++I    VVTG GFPE R+VR+LLSE    H ++V V+H+SRPL+GG++  PE+  E+D+ T  + TA+L+++P
Sbjct:   68 NGKSVTIQGSHVVTGRGFPEPRKVRILLSEPREVHRQRVTVLHLSRPLVGGVA-LPEDPNEIDVATFRRVTAILRAFP 144
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A833TGC7_PHYIN (Regulator of chromosome condensation (RCC1) repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGC7_PHYIN)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE    H ++V V+H+SRPL GGL   PE+  E+D+ T+ KYTA+L+S+P
Sbjct:   68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: D0NR99_PHYIT (VPS9 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NR99_PHYIT)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE    H ++V V+H+SRPL GGL   PE+  E+D+ T+ KYTA+L+S+P
Sbjct:   68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: V9F7P2_PHYPR (VPS9 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F7P2_PHYPR)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE    H ++V V+H+SRPL GGL   PE+  E+D+ T+ KYTA+L+S+P
Sbjct:   68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A225UX42_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UX42_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.180e-13
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE    H ++V V+H+SRPL GG+   PE+  E+D+ T  KYTA+L+S+P
Sbjct:   66 NGKQVAVLGSHIHTGKGFNDQRQVRILLSEKREIHHQEVTVLHISRPLAGGIE-VPEDPSEIDVATFRKYTAILRSFP 142
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BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A2P4YDT4_9STRA (VPS9 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDT4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.090e-13
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE    H ++V V+H+SRPL GG+   PE+  E+D+ T  KYTA+L+S+P
Sbjct:   69 NGKQVAVLGSHIHTGRGFNDRRQVRILLSEKREIHHQEVTVLHISRPLEGGIE-VPEDPSEIDVATFRKYTAILRSFP 145
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 8.310e-13
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +SI   QV T  GF E R+VR+LLSE    H +++ ++H+SRPL+GG+   PE+  E+D+ T  +YTA+L+S+P
Sbjct:   72 NGKTVSIIGSQVHTRRGFDEPRKVRILLSEQRDVHHQEIMLLHLSRPLIGGIV-LPEDPNEIDLATFRRYTAILRSFP 148
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A6A3J236_9STRA (VPS9 domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J236_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
            N + +++    + TG GF + R+VR+LLSE     L++V V+H+SRPL GG+   PE+  E+D+ T  KYTA+L+S+P
Sbjct:   67 NGKQVAVVGSHIHTGKGFKDRRQVRILLSEKREIQLQEVTVLHISRPLEGGIE-IPEDPSEIDVATFRKYTAILRSFP 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JHA7_9PHAE4.590e-2136.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN1_ECTSI2.220e-2035.83Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A5D6Y6E5_9STRA9.380e-1446.15Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A833TGC7_PHYIN1.270e-1344.87Regulator of chromosome condensation (RCC1) repeat... [more]
D0NR99_PHYIT1.280e-1344.87VPS9 domain-containing protein n=1 Tax=Phytophthor... [more]
V9F7P2_PHYPR1.280e-1344.87VPS9 domain-containing protein n=9 Tax=Phytophthor... [more]
A0A225UX42_9STRA3.180e-1343.59Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A2P4YDT4_9STRA6.090e-1343.59VPS9 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A8K1CEM3_PYTOL8.310e-1344.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3J236_9STRA1.010e-1243.59VPS9 domain-containing protein n=2 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10644contigE-siliculosus-1a_F_contig10644:354..1400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size234
Model size234
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.DZ
EggNOG OGsCOG5184@1,KOG1426@2759
EggNOG free text desc.guanyl-nucleotide exchange factor activity
Seed eggNOG ortholog2880.D7FTN1
Seed ortholog evalue2.6e-17
Seed ortholog score94.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.9472275-CDS-E-siliculosus-1a_F_contig10644:353..4791622927564.9472275-CDS-E-siliculosus-1a_F_contig10644:353..479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10644 354..479 -
1696318588.567056-CDS-E-siliculosus-1a_F_contig10644:353..4791696318588.567056-CDS-E-siliculosus-1a_F_contig10644:353..479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10644 354..479 -
1622927564.961201-CDS-E-siliculosus-1a_F_contig10644:1292..14001622927564.961201-CDS-E-siliculosus-1a_F_contig10644:1292..1400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10644 1293..1400 -
1696318588.578999-CDS-E-siliculosus-1a_F_contig10644:1292..14001696318588.578999-CDS-E-siliculosus-1a_F_contig10644:1292..1400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10644 1293..1400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10644.458.1prot_E-siliculosus-1a_F_contig10644.458.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10644 354..1400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10644.458.1

>prot_E-siliculosus-1a_F_contig10644.458.1 ID=prot_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMG
GLSWAPENTGELDMITVDKYTAVLKSYP
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mRNA from alignment at E-siliculosus-1a_F_contig10644:354..1400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AATGATAGGCATCTGTCGATTTTTCCCCAGCAGGTGGTGACTGGGGCTGG
ATTTCCAGAATGGAGGCGTGTGCGACTGCTGCTGTCAGAGGACCTCGGCC
AGCACCTCGTTGCGGCCGGGGAGCAACCGCTCCGTCCGCCCACGGCAGCT
CCCCGAGAAGCAGCTGAAGCCTCAGCGGAGGCGGCGGCCGAGGTGGTTGC
GGGGGGTAGTAGAACGCGCGATTCCACGACGGGGGCTCTGGGTAAGGAGG
ACGCCGGGGGTGCAGGGGTTGGTGATGGCGGCGGCGAGACGGTAGAAGCA
GATGCTCGAAGGAAGGCGAACTCCAACGCCAAGGTGGGAAAAATTGGCGG
GATTGCCGCCTGTCTGTCTTGTCTTCTTGTTGGCTGGTCTGTCGTCTGAT
TGGCTGTTTTCCTCGCTTGTGCGGCTTTTTCATGTCTTTTGTGCTTTTGG
TTAATTGACGGGGAGGGGGGGAAGGCGGTGTTTCTCACCGCTCCGTGCGT
CGGTCTGGCTTGTGTTGGACCACGTCGAGCGAAAGCCGGCTTTGGTCCTT
CTACTCCTTTGTAGGGGGGGCGGGGTGGTGAGTAGGCAAATATGGGCCAA
AGGAGGAGAGCGAGAGGAAGAGGTGCCCAAGGACATGGACGGCGAAGCGC
CGAAAAACACTACCACAAACTCTTTCCAGGCGTGCCTGCCACTTTCTTCT
TTAGTCTCACGATCGGCGCGTGTTGTCGGAGACGATGGCTTGGCGCTAAA
TAATCGCGAAACCACCGCGCATGGGTTACTCCAATACGCCCCTTTCGCAT
GACACAGGTGGTGAAGATAATCGAAACGAACGCCCCTGGTGAGAAGGAAG
AGCGGGGCGACGCAAGCCGCAAGGCCAAGACTGCCACCACCGTGAGAGGG
GGGGAGTCGAGAAAACGAGAGCGAAAGGTCAGGGTGATGCATGTCTCGAG
GCCGCTGATGGGAGGGCTGTCTTGGGCGCCCGAGAACACCGGGGAGCTGG
ACATGATCACCGTCGACAAGTACACGGCCGTCCTCAAGTCTTACCCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10644:354..1400-

>mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AATGATAGGCATCTGTCGATTTTTCCCCAGCAGGTGGTGACTGGGGCTGG
ATTTCCAGAATGGAGGCGTGTGCGACTGCTGCTGTCAGAGGACCTCGGCC
AGCACCTCAATGATAGGCATCTGTCGATTTTTCCCCAGCAGGTGGTGACT
GGGGCTGGATTTCCAGAATGGAGGCGTGTGCGACTGCTGCTGTCAGAGGA
CCTCGGCCAGCACCTCCGAAAGGTCAGGGTGATGCATGTCTCGAGGCCGC
TGATGGGAGGGCTGTCTTGGGCGCCCGAGAACACCGGGGAGCTGGACATG
ATCACCGTCGACAAGTACACGGCCGTCCTCAAGTCTTACCCTCGAAAGGT
CAGGGTGATGCATGTCTCGAGGCCGCTGATGGGAGGGCTGTCTTGGGCGC
CCGAGAACACCGGGGAGCTGGACATGATCACCGTCGACAAGTACACGGCC
GTCCTCAAGTCTTACCCT
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