Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1064.457.1 vs. uniprot
Match: A0A7S3Y2R5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2R5_HETAK) HSP 1 Score: 47.4 bits (111), Expect = 3.670e-5 Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 Query: 1 MYGSQTGNAQSIAEGVHDGCQKRGLESTLLKCDAWKK 111
MYGSQTGNA+SIA+ +H RG T+ + DAWKK
Sbjct: 16 MYGSQTGNAESIAKDLHASLLARGFACTVTEMDAWKK 52
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 198 |
| Model size | 198 |
| Exons | 2 |
| Ec32 ortholog | Ec-19_000950.1 |
| Ec32 ortholog description | Flavoprotein-like |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927564.9060125-CDS-E-siliculosus-1a_F_contig1064:34909..35056 | 1622927564.9060125-CDS-E-siliculosus-1a_F_contig1064:34909..35056 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1064 34910..35056 + |
| 1696318588.5468316-CDS-E-siliculosus-1a_F_contig1064:34909..35056 | 1696318588.5468316-CDS-E-siliculosus-1a_F_contig1064:34909..35056 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1064 34910..35056 + |
| 1622927564.9174056-CDS-E-siliculosus-1a_F_contig1064:36202..36253 | 1622927564.9174056-CDS-E-siliculosus-1a_F_contig1064:36202..36253 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1064 36203..36253 + |
| 1696318588.5569959-CDS-E-siliculosus-1a_F_contig1064:36202..36253 | 1696318588.5569959-CDS-E-siliculosus-1a_F_contig1064:36202..36253 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1064 36203..36253 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1064.457.1 >prot_E-siliculosus-1a_F_contig1064.457.1 ID=prot_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
MYGSQTGNAQSIAEGVHDGCQKRGLESTLLKCDAWKKVTIQSVCLSIHSL
ATTATNKHVEEGRWQ* back to topmRNA from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1064.457.1 ID=mRNA_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCA
CGACGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACG
CCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTGTG
TGTCTGGCCTGGCGTTGGGAGCACGCTGCTTAAGTGCGACGCCTGGAAGG
TGGCCATTCAAAGTGTGTGTCTGGCCTGGCGTTAAGTGGGAGCACGCTGC
CTAAGTGCGCCCCCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGGCC
TGGCGTTAAGTGGGAGCACGCTGCCTAAGTGCGCCCCCTGGAATAAACGT
AATAAAAGTGGTTCGAAAGAGTGTTTGGCCTGAAGGGCTTGGGAGTTAAT
GTAAGAACTTCAGGCTCTCAAAGAAACAGAGGCTTGAGAACTTCACCACA
AGAACAGGTGCTCAAAGTCAAGAATCCTGCACTAAATCCTAATCCCATAC
AAGTACAAGATCTTCCCTCCGGAGAGAGTAAACTGATTCGCTTGAACGAC
ACAGGGGGATATGCAAGAGGAGGAAGGCAAACTTTTTCATAGAACAACAG
CAGTTGCCGGTGTTGACGTGTGTGGGTGGGCACGCGCCGACGTAGGCGCG
CATCCTCCTCACTCTGGAAGTAGTTTAAGCCACTAAGCCGCTGTGTAAAG
CGGGTAAGCACCTGTACCCCATCACAGCAGTGCTCGAACTAGGAACGGTC
TTGGCGAGCATGCAGCCAACCTCCTGCAACAGGGCCACCTTTTGGGCGGG
CATCATGTACTGCCGGTATGTGGATGCATACCAAGTTGCTGAGTACCTCG
GAGGAGAGCCAGCAGGTAGATCGCGCGGCGATCATGAAAGAACTTATCTC
GGTAGCTAAGTTTGTCAGTCTTAGCTACAGCACTAAGTTCTTTAATTATT
GCGGCGCGATCTACTTGCAGACTCTCCTCCGAGGTACTCAGCAACTCGGT
ATGCATCCACATACCGGCAGTATCGTCTGCCCCACTTGCATGGCGTGTTT
GAGCCCAGCGTCGAGACAAAGTTGTTCAGTTGACCGTTCCCTAGTTCTCG
AGCAACTGCTGTGATGGGGTATAGGTGCTTACCCGCTTTACCCAGCTGCC
TAGTGGCTTAGACTCTAGAGTGAGGAGGATGCGCGCCTACACGTCGGCGC
GTGCCCACGCAAACACTGCAACACCGGCGTCTGCTGCTGTTCTATGAAAA
CGCGCCTTGTCTGCACTTACTTGTCTGTGTTCTGTTCTTTGAGTTGGCAA
CTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ >mRNA_E-siliculosus-1a_F_contig1064.457.1 ID=mRNA_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCA
CGACGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACG
CCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTATG
TATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCACGA
CGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACGCCT
GGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTTTGGCA
ACTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGATTGGC
AACTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGA back to top
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