mRNA_E-siliculosus-1a_F_contig1064.457.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1064.457.1
Unique NamemRNA_E-siliculosus-1a_F_contig1064.457.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1064.457.1 vs. uniprot
Match: A0A7S3Y2R5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2R5_HETAK)

HSP 1 Score: 47.4 bits (111), Expect = 3.670e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 MYGSQTGNAQSIAEGVHDGCQKRGLESTLLKCDAWKK 111
            MYGSQTGNA+SIA+ +H     RG   T+ + DAWKK
Sbjct:   16 MYGSQTGNAESIAKDLHASLLARGFACTVTEMDAWKK 52
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1064.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y2R5_HETAK3.670e-556.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1064contigE-siliculosus-1a_F_contig1064:34910..36253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size198
Model size198
Exons2
Ec32 orthologEc-19_000950.1
Ec32 ortholog descriptionFlavoprotein-like
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.9060125-CDS-E-siliculosus-1a_F_contig1064:34909..350561622927564.9060125-CDS-E-siliculosus-1a_F_contig1064:34909..35056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 34910..35056 +
1696318588.5468316-CDS-E-siliculosus-1a_F_contig1064:34909..350561696318588.5468316-CDS-E-siliculosus-1a_F_contig1064:34909..35056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 34910..35056 +
1622927564.9174056-CDS-E-siliculosus-1a_F_contig1064:36202..362531622927564.9174056-CDS-E-siliculosus-1a_F_contig1064:36202..36253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 36203..36253 +
1696318588.5569959-CDS-E-siliculosus-1a_F_contig1064:36202..362531696318588.5569959-CDS-E-siliculosus-1a_F_contig1064:36202..36253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1064 36203..36253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1064.457.1prot_E-siliculosus-1a_F_contig1064.457.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1064 34910..36253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1064.457.1

>prot_E-siliculosus-1a_F_contig1064.457.1 ID=prot_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
MYGSQTGNAQSIAEGVHDGCQKRGLESTLLKCDAWKKVTIQSVCLSIHSL
ATTATNKHVEEGRWQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1064:34910..36253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1064.457.1 ID=mRNA_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCA
CGACGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACG
CCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTGTG
TGTCTGGCCTGGCGTTGGGAGCACGCTGCTTAAGTGCGACGCCTGGAAGG
TGGCCATTCAAAGTGTGTGTCTGGCCTGGCGTTAAGTGGGAGCACGCTGC
CTAAGTGCGCCCCCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGGCC
TGGCGTTAAGTGGGAGCACGCTGCCTAAGTGCGCCCCCTGGAATAAACGT
AATAAAAGTGGTTCGAAAGAGTGTTTGGCCTGAAGGGCTTGGGAGTTAAT
GTAAGAACTTCAGGCTCTCAAAGAAACAGAGGCTTGAGAACTTCACCACA
AGAACAGGTGCTCAAAGTCAAGAATCCTGCACTAAATCCTAATCCCATAC
AAGTACAAGATCTTCCCTCCGGAGAGAGTAAACTGATTCGCTTGAACGAC
ACAGGGGGATATGCAAGAGGAGGAAGGCAAACTTTTTCATAGAACAACAG
CAGTTGCCGGTGTTGACGTGTGTGGGTGGGCACGCGCCGACGTAGGCGCG
CATCCTCCTCACTCTGGAAGTAGTTTAAGCCACTAAGCCGCTGTGTAAAG
CGGGTAAGCACCTGTACCCCATCACAGCAGTGCTCGAACTAGGAACGGTC
TTGGCGAGCATGCAGCCAACCTCCTGCAACAGGGCCACCTTTTGGGCGGG
CATCATGTACTGCCGGTATGTGGATGCATACCAAGTTGCTGAGTACCTCG
GAGGAGAGCCAGCAGGTAGATCGCGCGGCGATCATGAAAGAACTTATCTC
GGTAGCTAAGTTTGTCAGTCTTAGCTACAGCACTAAGTTCTTTAATTATT
GCGGCGCGATCTACTTGCAGACTCTCCTCCGAGGTACTCAGCAACTCGGT
ATGCATCCACATACCGGCAGTATCGTCTGCCCCACTTGCATGGCGTGTTT
GAGCCCAGCGTCGAGACAAAGTTGTTCAGTTGACCGTTCCCTAGTTCTCG
AGCAACTGCTGTGATGGGGTATAGGTGCTTACCCGCTTTACCCAGCTGCC
TAGTGGCTTAGACTCTAGAGTGAGGAGGATGCGCGCCTACACGTCGGCGC
GTGCCCACGCAAACACTGCAACACCGGCGTCTGCTGCTGTTCTATGAAAA
CGCGCCTTGTCTGCACTTACTTGTCTGTGTTCTGTTCTTTGAGTTGGCAA
CTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:34910..36253+

>mRNA_E-siliculosus-1a_F_contig1064.457.1 ID=mRNA_E-siliculosus-1a_F_contig1064.457.1|Name=mRNA_E-siliculosus-1a_F_contig1064.457.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:34910..36253+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCA
CGACGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACG
CCTGGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTATG
TATGGGTCGCAGACCGGGAACGCGCAGTCCATTGCCGAGGGCGTCCACGA
CGGATGCCAGAAGAGAGGGTTGGAGAGCACGCTGCTTAAGTGCGACGCCT
GGAAGAAGGTGACCATTCAAAGTGTGTGTCTGTCCATTCACAGTTTGGCA
ACTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGATTGGC
AACTACTGCCACAAACAAGCATGTCGAGGAGGGCAGGTGGCAGTGA
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