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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 1.850e-25 Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 Query: 1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
EGEVSF GGIRR LDERRRRL GGSD PSDASSTTD+DLDVQFIRVEKEL+LKTKEL
Sbjct: 2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.310e-23 Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 1 Query: 1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
EGEVSFKGGIRRMLDERR RLSGGSDTPSD SSTTDEDLDV FIRVEKELKL+TKEL
Sbjct: 878 EGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKEL 934
BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 5.410e-17 Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 Query: 37 MLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
MLDERR RLSGGSDT SDASSTTDEDLDVQFIRVEKELKLKTKEL
Sbjct: 1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKEL 45
BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 3.830e-10 Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 Query: 1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDV 123
EGEVS IRRMLDER RRLSGGS+TPSDASSTTDED DV
Sbjct: 280 EGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 171 |
| Model size | 171 |
| Exons | 1 |
| Ec32 ortholog | Ec-11_005340.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927564.3059435-CDS-E-siliculosus-1a_F_contig10631:260..431 | 1622927564.3059435-CDS-E-siliculosus-1a_F_contig10631:260..431 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10631 261..431 + |
| 1696318588.2567723-CDS-E-siliculosus-1a_F_contig10631:260..431 | 1696318588.2567723-CDS-E-siliculosus-1a_F_contig10631:260..431 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10631 261..431 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10631.450.1 >prot_E-siliculosus-1a_F_contig10631.450.1 ID=prot_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKEL
KLKTKEL back to topmRNA from alignment at E-siliculosus-1a_F_contig10631:261..431+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10631.450.1 ID=mRNA_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10631:261..431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGGTGAAGTGTCTTTCAAGGGTGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGGCTCAGCGGGGGATCAGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGACGTGCAGTTCATTCGAGTCGAGAAGGAGCTG
AAATTGAAGACGAAGGAACTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10631:261..431+ >mRNA_E-siliculosus-1a_F_contig10631.450.1 ID=mRNA_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10631:261..431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGGTGAAGTGTCTTTCAAGGGTGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGGCTCAGCGGGGGATCAGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGACGTGCAGTTCATTCGAGTCGAGAAGGAGCTG
AAATTGAAGACGAAGGAACTCGAGGGTGAAGTGTCTTTCAAGGGTGGCAT
CAGGAGAATGCTGGACGAGAGACGTCGCCGGCTCAGCGGGGGATCAGACA
CCCCCTCGGATGCCAGCAGCACGACCGATGAAGACCTTGACGTGCAGTTC
ATTCGAGTCGAGAAGGAGCTGAAATTGAAGACGAAGGAACTC back to top
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