mRNA_E-siliculosus-1a_F_contig10631.450.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10631.450.1
Unique NamemRNA_E-siliculosus-1a_F_contig10631.450.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.850e-25
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
            EGEVSF GGIRR LDERRRRL GGSD PSDASSTTD+DLDVQFIRVEKEL+LKTKEL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.310e-23
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
            EGEVSFKGGIRRMLDERR RLSGGSDTPSD SSTTDEDLDV FIRVEKELKL+TKEL
Sbjct:  878 EGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKEL 934
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BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.410e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   37 MLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
            MLDERR RLSGGSDT SDASSTTDEDLDVQFIRVEKELKLKTKEL
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKEL 45
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BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.830e-10
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDV 123
            EGEVS    IRRMLDER RRLSGGS+TPSDASSTTDED DV
Sbjct:  280 EGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10631.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKS3_ECTSI1.850e-2589.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE3.310e-2392.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI5.410e-1795.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH42_9PHAE3.830e-1082.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10631contigE-siliculosus-1a_F_contig10631:261..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size171
Model size171
Exons1
Ec32 orthologEc-11_005340.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.3059435-CDS-E-siliculosus-1a_F_contig10631:260..4311622927564.3059435-CDS-E-siliculosus-1a_F_contig10631:260..431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10631 261..431 +
1696318588.2567723-CDS-E-siliculosus-1a_F_contig10631:260..4311696318588.2567723-CDS-E-siliculosus-1a_F_contig10631:260..431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10631 261..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10631.450.1prot_E-siliculosus-1a_F_contig10631.450.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10631 261..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10631.450.1

>prot_E-siliculosus-1a_F_contig10631.450.1 ID=prot_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
EGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKEL
KLKTKEL
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mRNA from alignment at E-siliculosus-1a_F_contig10631:261..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10631.450.1 ID=mRNA_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10631:261..431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGGTGAAGTGTCTTTCAAGGGTGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGGCTCAGCGGGGGATCAGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGACGTGCAGTTCATTCGAGTCGAGAAGGAGCTG
AAATTGAAGACGAAGGAACTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10631:261..431+

>mRNA_E-siliculosus-1a_F_contig10631.450.1 ID=mRNA_E-siliculosus-1a_F_contig10631.450.1|Name=mRNA_E-siliculosus-1a_F_contig10631.450.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10631:261..431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGGGTGAAGTGTCTTTCAAGGGTGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGGCTCAGCGGGGGATCAGACACCCCCTCGGATGCCAGCAGCA
CGACCGATGAAGACCTTGACGTGCAGTTCATTCGAGTCGAGAAGGAGCTG
AAATTGAAGACGAAGGAACTCGAGGGTGAAGTGTCTTTCAAGGGTGGCAT
CAGGAGAATGCTGGACGAGAGACGTCGCCGGCTCAGCGGGGGATCAGACA
CCCCCTCGGATGCCAGCAGCACGACCGATGAAGACCTTGACGTGCAGTTC
ATTCGAGTCGAGAAGGAGCTGAAATTGAAGACGAAGGAACTC
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